PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0133s00220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 695aa    MW: 77171.5 Da    PI: 5.7229
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0133s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24128228198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  Vradi0133s00220.1 128 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 217
                        99****************************977777888*************************************************..34 PP

                        SEE..EEEEE- CS
                 B3  88 sefelvvkvfr 98 
                        +++el+v+v+r
  Vradi0133s00220.1 218 DNGELRVGVRR 228
                        89999****98 PP
2Auxin_resp965.7e-32254335183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t++ F v+Y+Pr+  s+F++ v+k+++a+++k+ vGmRfkm+fe++ds+e  +r+sGt+vg++d++p +W+nSkWrsLk
  Vradi0133s00220.1 254 ASHAVATQTLFVVYYKPRT--SQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAEtdKRFSGTIVGIEDISP-HWENSKWRSLK 335
                        789***************6..9********************************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-39119257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-40122243IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-21126228No hitNo description
PfamPF023622.8E-22128228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28128230IPR003340B3 DNA binding domain
SMARTSM010193.2E-22128230IPR003340B3 DNA binding domain
PfamPF065078.8E-30254335IPR010525Auxin response factor
PfamPF023092.8E-12561667IPR033389AUX/IAA domain
PROSITE profilePS5174526.102583664IPR000270PB1 domain
SuperFamilySSF542771.63E-12585659No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MLSRASNVSA EAVVGSGDGE DELYEQLWKA CAGPLVDVPR VGQRVFYFPQ GHMEQLEAST  60
NQELNQRIPL LHLPTKILCR VVNVHLLAEQ ETDEVYAQIT LVPESNQDEP TSPDPCTDEP  120
TRAPAHSFCK VLTASDTSTH GGFSVLRKHA TECLPALDMS QPTPTQELVA KDLHGYEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD TFVFLRGDNG ELRVGVRRLA RQASSMPSSV  240
ISSQSMHLGV LATASHAVAT QTLFVVYYKP RTSQFIIGVN KYLEAVSTKF GVGMRFKMRF  300
EGDDSAETDK RFSGTIVGIE DISPHWENSK WRSLKVQWDE LAAVPRPERV SPWEIEPFVA  360
SSTTPSVQPT IVKTKRPRPS SEVPDVDATS AASVFWDADL PQPDTTQINV LAESKQNDNT  420
GTWHHMQTDM NSKSNSNNTM LRNQTEGSWL SSPHSSCPSQ LFQDTTDDSK SVSAWPVSKP  480
HPPRLSNEHA LDQVDKESKV ETATSYRLFG IDLIDHSRNS PAVEKASSLA VNVPKVTTEG  540
CTSTLSQTDA GHMSEVPKAS SKERKQEQQQ VSPKETQSKQ ISRSRTKVQM QGVAVGRAVD  600
LTMLDGYEQL INELEEMFDI KGQLQNRNKW EIVFTDDEGD MMLVGDDPWP EFCSMVRRIF  660
ICSSQDVKKM NCGSKLPISS VEDGTVISSD TTET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1692136217359Auxin response factor 1
4ldw_A1e-1692136217359Auxin response factor 1
4ldw_B1e-1692136217359Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0133s00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490769.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3TAI40.0A0A1S3TAI4_VIGRR; Auxin response factor
STRINGXP_007134010.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9