PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0122s00110.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 606aa MW: 67134.7 Da PI: 5.3188

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0122s00110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	154.1	1.3e-47	387	604	147	374
GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle.leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237 ++sp s ++ el+ t+e+L+++A+ ++++fe nvl ++l++ + + + + +Ea+aVn+ l+ ++ + + + vL++vk+l+Pk Vradi0122s00110.1 387 IVSPLSYDEFELNVTQEKLNQYAKDINMSFELNVLSIESLSSPScPLSVQYYDNEATAVNMPLSCFTNY------PTLFPLVLRFVKQLRPK 472 5566667899**********************9777777663144556666******999988......334468******* PP GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 vvv ++++d +++F + +++al++ysal++sl+a + + +k+E++++ +++++ ++c ++ +e+l +Wr+++ + GF+p ++ Vradi0122s00110.1 473 VVVTLDRNCDQLDAPFSTNIVHALHCYSALLESLDAV-NVNLDVLQKIEKHFILPSLKKTITCPLRS----QEKLPTWRNMFLQYGFSPFTF 559 ******************************665.3466999****************99....9**************** PP GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 s+++++qa++l++k +++g+++e ++ slvl+W++++L++vS Wr Vradi0122s00110.1 560 SNFTEAQAECLVQKAPVRGFQLERKHSSLVLCWQRKELITVSTWR 604 ******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.472	320	584	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-45	387	604	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MKAMPFPFEE FQGKGVLDFS SGSDSFSLLL HHPQAKWTID KEDYCYVGST EPTSVLDSRR 60 SPNSSTMSSS LGSSNTISKG GSGGSTNNTT CYTPTLSQNP PQTALETSTE KCGVRMEDWE 120 SQDQSILRLI MADAEDPSVG LSKLFQGSGC GSQQTVDFNA GFGVVDQGLN MVSIVDPSGN 180 YPGFPFIAEN IDGHNGNKTG SLSVGESMFS VSGNNSLLFS TSPGGFNSQQ QVIGEVDEKP 240 QVINPQFELN QTQVQFSENP SLFVPMMYPQ LQEQQVFSQH PAKRHVFEPA GYSYQAPRMP 300 LLDSGQEMFG RRQQTQLPLF PHHMPPQIVP SAKPQKASST GEDASHQLQQ AIFDQLYKTA 360 ELIEAGNPVH AQGILARLNH QLSPIAIVSP LSYDEFELNV TQEKLNQYAK DINMSFELNV 420 LSIESLSSPS CPLSVQYYDN EATAVNMPLS CFTNYPTLFP LVLRFVKQLR PKVVVTLDRN 480 CDQLDAPFST NIVHALHCYS ALLESLDAVN VNLDVLQKIE KHFILPSLKK TITCPLRSQE 540 KLPTWRNMFL QYGFSPFTFS NFTEAQAECL VQKAPVRGFQ LERKHSSLVL CWQRKELITV 600 STWRC*

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MKAMPFPFEE FQGKGVLDFS SGSDSFSLLL HHPQAKWTID KEDYCYVGST EPTSVLDSRR  60
SPNSSTMSSS LGSSNTISKG GSGGSTNNTT CYTPTLSQNP PQTALETSTE KCGVRMEDWE  120
SQDQSILRLI MADAEDPSVG LSKLFQGSGC GSQQTVDFNA GFGVVDQGLN MVSIVDPSGN  180
YPGFPFIAEN IDGHNGNKTG SLSVGESMFS VSGNNSLLFS TSPGGFNSQQ QVIGEVDEKP  240
QVINPQFELN QTQVQFSENP SLFVPMMYPQ LQEQQVFSQH PAKRHVFEPA GYSYQAPRMP  300
LLDSGQEMFG RRQQTQLPLF PHHMPPQIVP SAKPQKASST GEDASHQLQQ AIFDQLYKTA  360
ELIEAGNPVH AQGILARLNH QLSPIAIVSP LSYDEFELNV TQEKLNQYAK DINMSFELNV  420
LSIESLSSPS CPLSVQYYDN EATAVNMPLS CFTNYPTLFP LVLRFVKQLR PKVVVTLDRN  480
CDQLDAPFST NIVHALHCYS ALLESLDAVN VNLDVLQKIE KHFILPSLKK TITCPLRSQE  540
KLPTWRNMFL QYGFSPFTFS NFTEAQAECL VQKAPVRGFQ LERKHSSLVL CWQRKELITV  600
STWRC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0122s00110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014490271.1	0.0	scarecrow-like protein 6 isoform X1
TrEMBL	A0A1S3T932	0.0	A0A1S3T932_VIGRR; scarecrow-like protein 6 isoform X1
STRING	XP_007134751.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-69	GRAS family protein