PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0111s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 743aa    MW: 83107 Da    PI: 6.5195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0111s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.92.2e-1043637221362
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL+ cA+av+++d + a+++L+r+++++sp gd +qRla+ f+ +L+arla+++s++yk l +++ts    ++ l+a++l+  ++P+ k
  Vradi0111s00030.1 363 LRTLLVLCAQAVAADDYSGAHEFLKRIRKHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTS---AADFLKAYHLYLAACPFRK 451
                        5789************************************************************999999...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +s ++ N +I e+  ++ rvH+iDf+i +G+QWp+++q L+   +gpp+lRiTg++ p++g   +e++ etg+rLa +Ae+++vpfe+n+ +
  Vradi0111s00030.1 452 MSSFISNVTIRESSTNSARVHVIDFGILYGFQWPTFIQRLSLVVGGPPKLRITGIDFPQPGfrPAERIVETGRRLAAYAESFKVPFEYNA-I 542
                        ************************************************************9*****************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        ak++e+++leeL+++++E l+V + ++ +++ldesv ++s+r+++L+l+++++P+++++   +   n++ F++rf eal +ys+lfd+le+ 
  Vradi0111s00030.1 543 AKKWETVQLEELKIDREEYLVVTCFYRGKNVLDESVLVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETI 634
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                        +p+e+ er+ +E+e++gre+ nv+aceg er+er et+++W++r+ +aGF++ ++++  +k a   +++ + + + ++e+s++l++g 
  Vradi0111s00030.1 635 VPQEDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFSQQSFDHALVKRAIEKVSTSYHKDFVIDEDSQWLLQGF 722
                        ********************************************************************999888*********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.733337714IPR005202Transcription factor GRAS
PfamPF035147.4E-102363722IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MQRLVIMDPR LCGFSGPPNE VRLGNQRFEN GFFDQSRDFS YLQSNLVPSK TPSSSSVLTH  60
EEPSPEECEF SDAILSYISQ ILMEEDMEDK TCMLHDSLDL QIAERSFYEV IGEKYPSSLL  120
GNPSPVDPGG GVGDHNFSEN YGTCSYNDGD LSSIFTNFRQ NLGELPNHNL RANSISQSSC  180
SSSNSVISSV EGPVDSPSSI LQVPDLNSES QSILQFQKGV EEASKFLPSG NDLFANLGVA  240
NFSKLEPKMG CDELSVKVEK DVGVSFLAGS KGRKHHLREE VDVEENRSSK QAAIFSEPTL  300
TSSSIDVILL HSLGDGKKVL MARREALQTK NDKIALSNGK SKVPNSGKGR SKKQSGKKEV  360
IDLRTLLVLC AQAVAADDYS GAHEFLKRIR KHSSPFGDGN QRLAHIFADG LEARLAGTGS  420
QIYKGLVSKR TSAADFLKAY HLYLAACPFR KMSSFISNVT IRESSTNSAR VHVIDFGILY  480
GFQWPTFIQR LSLVVGGPPK LRITGIDFPQ PGFRPAERIV ETGRRLAAYA ESFKVPFEYN  540
AIAKKWETVQ LEELKIDREE YLVVTCFYRG KNVLDESVLV DSPRNKFLSL IRKINPDLFI  600
HGITNGAFNA PFFVTRFREA LFHYSSLFDM LETIVPQEDW ERMLIEKEIF GREALNVIAC  660
EGCERVERPE TYRQWQARIL RAGFSQQSFD HALVKRAIEK VSTSYHKDFV IDEDSQWLLQ  720
GFKIKVGVQS EFSWGKQDYR IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3937068426329Protein SCARECROW
5b3h_A4e-3937068425328Protein SCARECROW
5b3h_D4e-3937068425328Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0111s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492074.10.0scarecrow-like protein 9
RefseqXP_014492075.10.0scarecrow-like protein 9
RefseqXP_014492076.10.0scarecrow-like protein 9
RefseqXP_014492077.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S3TE880.0A0A1S3TE88_VIGRR; scarecrow-like protein 9
STRINGXP_007140522.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein