PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0108s00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 20872.2 Da PI: 6.8996 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 108 | 132 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++ gRt+ +c srw++y Vradi0108s00160.1 108 NWDLIASMYVGGRTGAECESRWLNY 132 9******9999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53098 | 1.06E-6 | 33 | 86 | IPR012337 | Ribonuclease H-like domain |
CDD | cd00167 | 8.81E-4 | 96 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-12 | 107 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.7E-6 | 108 | 150 | No hit | No description |
SuperFamily | SSF46689 | 2.42E-10 | 115 | 158 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRMALKRLHA SIVAIITRNT TVSDVEKEYL EQKDKVKQMM SRIPNRICLT SDVWTAVTSE 60 GYICLTAHFV DENWKLTRQA NDMDNIIASV KDLEVTPERI RKFLPKVNWD LIASMYVGGR 120 TGAECESRWL NYEDPLINQG AWTKEEDKSL LLIVYMYQEL VRNCCIIGHK LYCIHVVWE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0108s00160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 4e-87 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015042 | 4e-87 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022633661.1 | 2e-67 | transcriptional activator Myb-like | ||||
TrEMBL | A0A3Q0ERG5 | 5e-66 | A0A3Q0ERG5_VIGRR; transcriptional activator Myb-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7441 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 2e-22 | myb domain protein 4r1 |