PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0095s00150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 284aa    MW: 30633.4 Da    PI: 8.0902
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0095s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.49.9e-16203264162
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        +ke+kr +r+ +NR++A+  R+RKka++  Le++vk Le++N++Lk++l++l++e + l++ 
  Vradi0095s00150.1 203 DKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQI 264
                        689******************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.89E-3033105No hitNo description
PfamPF145694.6E-3234100IPR027934Cellulose synthase, RING-type zinc finger
Gene3DG3DSA:3.30.40.107.2E-2734105IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500899.2294490IPR001841Zinc finger, RING-type
SMARTSM003385.0E-17203267IPR004827Basic-leucine zipper domain
PfamPF001704.5E-14204265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.702205268IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-16207267No hitNo description
SuperFamilySSF579594.25E-13207265No hitNo description
CDDcd147041.94E-21208259No hitNo description
PROSITE patternPS000360210225IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKGMNLLELD TVPIVGPLAL ERILIAGCSL VLSKPLKNLN GQICQICGDT IGLTATGDVF  60
VACHECGFPL CHSCYEYELK NVSQSCPQCK TRFTSQQEDA DFSSSSGHDS QIPNPHIANG  120
QPMSGDIPCA TSDAQSMQTT SGPMATTKQP GLESDEEIRR VPEIGGESAG TAASRPEAGS  180
NAGAERAQGT GEGQKKRGRS PADKESKRLK RLLRNRVSAQ QARERKKAYL IDLETRVKDL  240
EKKNSELKER LSTLQNENQM LRQILKNTTA SRRGSNSGTN NAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1weo_A3e-263493968cellulose synthase, catalytic subunit (IRX3)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0095s00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSOYSTF1A1e-159L28003.1 Glycine max TGACG-motif binding protein (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490287.11e-178cellulose synthase A catalytic subunit 1 [UDP-forming]
TrEMBLA0A1S3T9411e-177A0A1S3T941_VIGRR; cellulose synthase A catalytic subunit 1 [UDP-forming]
STRINGXP_007146305.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70643248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.19e-59bZIP family protein