PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0091s00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27200.2 Da PI: 6.6062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F + L H rtH Vradi0091s00170.1 164 HECPVCSRVFGSGQALGGHKRTH 186 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-6 | 120 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-5 | 160 | 187 | No hit | No description |
PROSITE profile | PS50157 | 9.66 | 164 | 186 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-12 | 164 | 186 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MRSHMMNLPV PPKESEFVPV QLSFEAESSP SQSSSSFYGL RENPKKSFRF ADPEFSFAAE 60 TGSVILQDRE SETESSKNPT RKRSKRAWQL GEPVKKMKLC GNNNKNESAS SASDTTAEEA 120 VFRSYQALGG HRASHKKMKL NSETEFQKAE LELEHVPVSE KKIHECPVCS RVFGSGQALG 180 GHKRTHVIGS SATHNTATVR TSATVSIGAS VRVGDSLIDL NLPAPVDDDE DISQFDHSAL 240 SDAEFVKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0091s00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490352.1 | 1e-117 | zinc finger protein ZAT9 isoform X1 | ||||
TrEMBL | A0A1S3T9A9 | 1e-116 | A0A1S3T9A9_VIGRR; zinc finger protein ZAT9 isoform X1 | ||||
STRING | XP_007134733.1 | 2e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-32 | C2H2-like zinc finger protein |