PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0086s00200.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 264aa MW: 30273.4 Da PI: 4.6973

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0086s00200.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.8e-15	13	56	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g WT+eEd +lv +v+++G+ +W+ +r g+ R++k+c++rw Vradi0086s00200.1 13 KGTWTPEEDRKLVAYVTRYGSWNWRQLPRFAGLERCGKSCRLRW 56 799***************************************** PP
2	Myb_DNA-binding	28.6	3.4e-09	55	78	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia +++ gRt++++k++w++ Vradi0086s00200.1 55 RWSVIATHLP-GRTDNEIKNHWHTT 78 4*******.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-16	7	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.657	8	83	IPR017930	Myb domain
SMART	SM00717	3.3E-13	12	81	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.02E-18	13	80	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-11	13	56	IPR001005	SANT/Myb domain
CDD	cd00167	6.66E-11	15	79	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-11	56	80	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MRTPSWDNRG LKKGTWTPEE DRKLVAYVTR YGSWNWRQLP RFAGLERCGK SCRLRWSVIA 60 THLPGRTDNE IKNHWHTTLK KRFGKKTVQT ETNVKASKSN SYKISDPDPL STELSSSEFS 120 SSDYTTHQNL FVEDGFDFLD AYLEDMNHNI STESFHISQV TTQANGSDAQ KTMECVRPES 180 PLSYYNENSV VENDDFGFLE AIEPITEHSW TEAFVADMSL IPNELLVPLV NESESYFSSA 240 YDVEDLWCLK NNSHDDLDVN LFQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0086s00200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-134	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491673.1	0.0	transcription factor MYB14
TrEMBL	A0A1S3TD32	0.0	A0A1S3TD32_VIGRR; transcription factor MYB14
STRING	XP_007149915.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16747	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-30	myb domain protein 16