PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0086s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32857.2 Da PI: 8.8079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.3 | 1.6e-32 | 55 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Vradi0086s00060.1 55 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadg 144 799***********9.99*****99984443333332222333336**********.555555677******************74444655 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l Vradi0086s00060.1 145 sETRWHKTGKTRPVYI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 195 5788************.999***********5444788889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-37 | 50 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.704 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 56 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MRIYNKEMTQ CSYPENNHTI IVERHKDSFI RTCPTCGHHI KCQEQAAGIH DLPGLPAGVK 60 FDPTDQEILE HLEAKVRSDI HKLHPLIDEF IPTLEGENGI CCTHPEKLPG VSKDGLIRHF 120 FHRPSKAYTT GTRKRRKVHT DADGSETRWH KTGKTRPVYI SGKLKGYKKI LVLYTNYRKQ 180 RKPEKTNWVM HQYHLGNNEE EKEGELVVSK VFYQTQPRQC GSLMKDSYPA KLNGESVHEV 240 TNHKSTGFVE FYNNSFVSFD QGDQHRPSSA QLVTHFPVHD GATFIP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0086s00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491769.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-116 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1S3TDC5 | 0.0 | A0A1S3TDC5_VIGRR; NAC domain-containing protein 73 | ||||
STRING | GLYMA12G33460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-106 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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