PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0083s01280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28737.5 Da PI: 9.7255 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 90 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++++G g W++Ia ++ gRt++++k++w+++l Vradi0083s01280.1 90 KGPWTAEEDQILVSHIQRYGHGnwralpkqagKWSAIATSLP-GRTDNEIKNFWHTHL 146 79****************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.55E-16 | 85 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.857 | 85 | 150 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 89 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 89 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 90 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-13 | 92 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDSKPVLFFF FIINGSAQNT NVFVVIRDWE NRKLGKKKSI RLKIVTSTSR GQWKEAAETY 60 RGKGHTLLCC AVKQAVTMKT PCCERMGMKK GPWTAEEDQI LVSHIQRYGH GNWRALPKQA 120 GKWSAIATSL PGRTDNEIKN FWHTHLKKRI QKSGVHINGN ASSHILQEAQ ANSSSSSSAV 180 SSAYGNVMID NYGLPSRKNP INPPIVGTGF YGAVPSDTFG ETEDNHDSCQ ISEEMEFWYN 240 IFIKSGQTSR DNENLGH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0083s01280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491522.1 | 1e-113 | transcription factor MYB4 | ||||
Refseq | XP_014491523.1 | 1e-113 | transcription factor MYB4 | ||||
Refseq | XP_022633556.1 | 1e-113 | transcription factor MYB4 | ||||
Refseq | XP_022633557.1 | 1e-113 | transcription factor MYB4 | ||||
Refseq | XP_022633558.1 | 1e-113 | transcription factor MYB4 | ||||
TrEMBL | A0A1S3TCM4 | 1e-112 | A0A1S3TCM4_VIGRR; transcription factor MYB4 | ||||
STRING | XP_007147213.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-31 | myb domain protein 14 |