PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0083s00820.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Whirly
Protein Properties Length: 249aa    MW: 27691.4 Da    PI: 9.9527
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0083s00820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly191.71.1e-59732082137
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        vyk+kaa+++ + +ptf++ldsg+++++r+G+++++++ +++erkydW+k+q+falsatev++l+ ++s++s+effhdp++ +sn+G+vrk+
  Vradi0083s00820.1  73 VYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMMTFMHSIGERKYDWDKRQKFALSATEVGSLITMGSHDSSEFFHDPSMLSSNAGQVRKS 164
                        9******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                        l+++P ++  G+fv+l+v n+l++++++fsvPv+ aefav++++
  Vradi0083s00820.1 165 LSIKPNANSNGYFVSLNVVNNLLNTKDYFSVPVTTAEFAVMKTA 208
                        ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.5E-7361227IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.28E-6264226IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.6E-5773207IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MFKLSRVLHL TSTSRHRLLE VLSSRNVEVG DSLWDRRDFT HSAGISTATN NYSAKGIAYT  60
RYASDRIFAP YTVYKGKAAF SLSPCLPTFT KLDSGTVVVD RRGSMMMTFM HSIGERKYDW  120
DKRQKFALSA TEVGSLITMG SHDSSEFFHD PSMLSSNAGQ VRKSLSIKPN ANSNGYFVSL  180
NVVNNLLNTK DYFSVPVTTA EFAVMKTACS FALPHIMGWD QITNQQSRGT VGLQRKGGSQ  240
ILDLEWEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-876622510169StWhy2
3n1i_A2e-876622510169protein StWhy2
3n1j_A2e-876622510169Protein StWhy2
3n1k_A2e-876622510169protein StWhy2
3n1l_A2e-876622510169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0083s00820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921460.0BT092146.1 Soybean clone JCVI-FLGm-10O7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491421.10.0single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0342e-92WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S3TCD01e-179A0A1S3TCD0_VIGRR; single-stranded DNA-binding protein WHY2, mitochondrial
STRINGXP_007147230.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-85WHIRLY 2