PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0070s00230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 257aa    MW: 28500.3 Da    PI: 5.6497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0070s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13108148445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        W ++E+ ll++a++++G g+W+ +a+++g +++  qc+++++
  Vradi0070s00230.1 108 WNADEEILLLEAIEMYGFGNWNEVAEYVG-TKSKSQCIDHYN 148
                        *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002911.0E-104489IPR000433Zinc finger, ZZ-type
SuperFamilySSF578509.18E-1648111No hitNo description
CDDcd023353.33E-254896No hitNo description
PROSITE profilePS5013510.6894891IPR000433Zinc finger, ZZ-type
PfamPF005696.9E-104888IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.05E-13100154IPR009057Homeodomain-like
PROSITE profilePS5129321.97103155IPR017884SANT domain
SMARTSM007173.4E-12104153IPR001005SANT/Myb domain
PfamPF002491.0E-13107148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-9108149IPR009057Homeodomain-like
CDDcd001671.28E-13108148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRCRAASVT GPADDDPNHR LKRKRAASEN SETLATVQGI ANSKVSLYHC NYCNKDISGR  60
IRIKCAVCQD FDLCIECFSV GAEVTPHKSN HPYRVMDNLS FPLICPDWNA DEEILLLEAI  120
EMYGFGNWNE VAEYVGTKSK SQCIDHYNAV YMNSPCFPLP DLSHVMGKGR DELFAMVKGH  180
EAKKEFSLTA ELMLKEEAPF SDVLSYEETK EAEIKNIEIS RLTSACGKSC SSTLKKTSNL  240
SQSKEVKVEG MFSDAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C2e-36481635120Transcriptional adapter 2
6cw3_E2e-36481635120Transcriptional adapter 2
6cw3_G2e-36481635120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0070s00230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150384e-82AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523682.10.0transcriptional adapter ADA2b isoform X2
SwissprotQ75LL63e-91TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1S3VZN10.0A0A1S3VZN1_VIGRR; Transcriptional adapter
STRINGGLYMA13G11200.21e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]