PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0051s00490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36759.4 Da PI: 6.8043 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 1.9e-08 | 121 | 161 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR++i +++ L++l+P +K++ a++L +A++Y+k L Vradi0051s00490.1 121 ARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 161 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.964 | 112 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-14 | 118 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.23E-10 | 118 | 166 | No hit | No description |
SMART | SM00353 | 1.1E-12 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 118 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-6 | 122 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDTNLNTTFT NVNTTYNHET MTTDQPNIIL HDHHQIPMGV GIWSNHHHPF HTQPSSSSST 60 NFLTDVLGIE FEEEEEEELG AMKEMMYQMA AMQPVDIDPA TVRKPKRRNV RISDDPQSVA 120 ARHRREKISE KIRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRLLQS TPQLHSVNAT 180 APNSDCPFAP TTLNASTSVN LPLGIQFNAG IHDHAAHSLH LQHSSGDNEN EERIQVTFYE 240 IVEDFTTSIV ILAKGIQVSE FRKVFLAKGI QVSELWWLER ATRGYGGALT AEILATSSSA 300 LGKVRNTQGL NNPGSIYKEK MFGRSRE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0051s00490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524459.2 | 1e-177 | transcription factor HEC3-like | ||||
TrEMBL | A0A1S3W2S5 | 1e-176 | A0A1S3W2S5_VIGRR; transcription factor HEC3-like | ||||
STRING | XP_007137709.1 | 1e-105 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 3e-47 | bHLH family protein |