PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0051s00410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 444aa    MW: 48728.5 Da    PI: 4.5682
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0051s00410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.42.1e-4771332128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +pGfrF+Ptd el+ ++Lk+kv+gkk++   vi+e+d+yk+ PwdLp k  +++++ ewyfF+++ kky +g r nr+t++gyWk+tgkd++
  Vradi0051s00410.1   7 TPGFRFRPTDVELIEFFLKRKVRGKKIPS-GVIAELDLYKYAPWDLPdKsVLQSGDLEWYFFCPQGKKYLSGGRLNRSTEAGYWKTTGKDRA 97 
                        69**************************9.99**************96446667788*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v + k+++vg+ ktLvf++g+apkg++tdWvmhe+rl
  Vradi0051s00410.1  98 VEH-KNRVVGMIKTLVFHTGKAPKGNRTDWVMHEFRL 133
                        **9.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-565156IPR003441NAC domain
PROSITE profilePS5100553.3736156IPR003441NAC domain
PfamPF023651.1E-248133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MARRNSTPGF RFRPTDVELI EFFLKRKVRG KKIPSGVIAE LDLYKYAPWD LPDKSVLQSG  60
DLEWYFFCPQ GKKYLSGGRL NRSTEAGYWK TTGKDRAVEH KNRVVGMIKT LVFHTGKAPK  120
GNRTDWVMHE FRLQDKEMVD EGISQDSYVI CRIFQKEGPG PRNGAQYGKP YDEKDWDTDE  180
EIDSVQSDRV ASVSTPVPIQ PSGSDISNAK DIHPSTSGCA GLTSELCVSK LMPSCSAHNA  240
IPNNQVVSVS CVSESMPSCS ALSSPNCALD SVSHLSAVPF APNYDVDSLS CVSKLMSSCL  300
PLALAPSNLV DASSSVPELI PSCTTRPSSS SPNHQDDDNI LYLLDYFKED DDTKAVNENN  360
GIEKVDPDQA NNAECAPCLD QNVIFENLGD LDSLVGLGEG TSGQKTGLST SDMFYVGDDM  420
FRSWESQDFL ELMDLAGPQP WQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-46515714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0051s00410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524527.10.0NAC domain-containing protein 82
SwissprotQ9FY823e-81NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A1S3W2010.0A0A1S3W201_VIGRR; NAC domain-containing protein 82
STRINGXP_007137718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-84NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]