PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0051s00400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 403aa    MW: 44916.4 Da    PI: 8.4336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0051s00400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042311333123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC  CgksF++   L  H ++H
  Vradi0051s00400.1 311 YKCAACGKSFKTFQGLGGHRSVH 333
                        9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355145072IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8085077IPR007087Zinc finger, C2H2
PfamPF139125.4E-75172IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576678.29E-6309337No hitNo description
PROSITE profilePS5015711.572311338IPR007087Zinc finger, C2H2
PfamPF139121.6E-6311335IPR007087Zinc finger, C2H2
SMARTSM003550.27311333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDRRDNGKEA VSDHVLDSFT KEKMKRSVLG SCKAEVESVA DEENPSPKLS QCDICLKTFG  60
CGKALGGHRR SHFMKQQQQK KVKTRFTYNH TSKPGGDNNI RVICDFDDDD GKHICCICKK  120
EFPTKNAFWL CKDTRGRSSI GAYQAAETLL YMSCSNYFSS HEWNRVFPKK DEVLPKSAPT  180
LIKQRKRKTF ESSPSKKDKV KKIKFLFKGE LNLGSTSNGV GECDGEGNEL NRCKGLSESG  240
VDHNHDEKKM KSFDDLNGES VTPTMQDHVG PSDVKKINMD KKGKTGKKLV LNSRTKDSES  300
EKASQEKTDW YKCAACGKSF KTFQGLGGHR SVHKEKNTVS IDEPNPSEAV AEQNNSSSSS  360
NMNKMEEPSF NETTLADQPC QSSGVKKLNF DLNELPCAND ED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188QRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0051s00400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524464.10.0uncharacterized protein LOC106780682
TrEMBLA0A1S3W2T00.0A0A1S3W2T0_VIGRR; uncharacterized protein LOC106780682
STRINGXP_007146189.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-06C2H2 family protein