PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0048s00750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 225aa    MW: 24353.8 Da    PI: 10.5065
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0048s00750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1217.1e-07164192230
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeiee 30 
                        + l+++rr++kNRe+A rsR+RK+ae+ +
  Vradi0048s00750.1 164 ATLQKQRRMIKNRESAARSRERKQAEMRR 192
                        5799**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-5159191No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASSKVVVST NPDLPRDSSI SPLSSLLLSD LHHSTSMDDL LKSITPSAAK TVDDVWKEIV  60
AGAHPHHPAG TVSGDRNAAT VNATATAPEG YEAITLEDFL TKAGAVREED VRGVLPPSSS  120
LPFPLPLPAE GSSSSVEPFG NGVAPTNSVP KGKRRVVEEP VDKATLQKQR RMIKNRESAA  180
RSRERKQAEM RRQRKKQLLE YIIPVEVMPK PRKKLRRVNS AQSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215KPRKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0048s00750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408119.11e-133PREDICTED: G-box-binding factor 4-like
TrEMBLA0A0S3R0C71e-132A0A0S3R0C7_PHAAN; Uncharacterized protein
STRINGXP_007159037.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-21bZIP family protein