PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0043s00800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28403.8 Da PI: 10.0365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.6e-21 | 109 | 159 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae Aa+a+++a+++++g+ Vradi0043s00800.1 109 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRGN 159 8********.**********66.....56*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-33 | 108 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.686 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-23 | 109 | 167 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-36 | 109 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 109 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-23 | 109 | 168 | No hit | No description |
PRINTS | PR00367 | 5.1E-12 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-12 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSAMVSALTH VVTGEVPKST DSAFLHDNHA VTPHVPSSAS TTPSNYVLGT SSHKRAREQD 60 ASCFSQTSSM PRSGECSNNS RSRITREMGN AVYEYKTTEN VRGDEERRKY RGVRQRPWGK 120 WAAEIRDPFK AARVWLGTFD TAEAAARAYD EAALRFRGNK AKLNFPENVT LRQPQFSVSN 180 SSTSLVSIST STDPVVHTPS FLPSQARIPG ITLITIKVMQ NSDHTDFCTA RNNVSGQSKE 240 KTNVPPFGKH LALCLVVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-24 | 108 | 169 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0043s00800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014489970.1 | 1e-150 | ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A1S3T881 | 1e-149 | A0A1S3T881_VIGRR; ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
STRING | XP_007137573.1 | 1e-107 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 5e-23 | related to AP2 6 |