PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0023s00780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 348aa MW: 37664.3 Da PI: 6.9733 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 22 | 126 | 2 | 101 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasns 85 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ ++ae+++ +a++ Vradi0023s00780.1 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwhptanA------ADAENNHTNAGS- 106 79**************************************************************665432221......211111111111. PP TCP 86 ssg.....kaaksaa.kskksq 101 + ++++s+ + + ++ Vradi0023s00780.1 107 --SdmgiaEQSESSGyNFQLQR 126 ..12233322222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-32 | 22 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.986 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKNAID KLAELPPWHP TANAADAENN HTNAGSSDMG IAEQSESSGY 120 NFQLQRQLGE DHDNHHSVFI PAPIDTDAIA FFPTTTATSS INFPTYPPDI ISRTNNSTED 180 LGLSLHSFQD PGLIHGQSQA DANQTQTPSN HQTLFSGSTQ VGFEANYPRI LTWNNDAGTD 240 MNRTGFMVNS PALLGQGGSA AYSQRGTLQS SFSPSLRPWS DIPMASSSEH HKSQPIQQAS 300 IFGSRFLSDA LPGFCIPARI QGEDGSHGVG PDKTSSSSPN SHHRTQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0023s00780.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522077.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_014522078.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_014522079.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-69 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A1S3VVI7 | 0.0 | A0A1S3VVI7_VIGRR; transcription factor TCP4 | ||||
STRING | XP_007149767.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-72 | TCP family protein |