PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 213aa    MW: 24224.2 Da    PI: 10.5404
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.11.8e-1628118186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+++ + +Liea  e++ +l+rg+l++ +W+ev++ +      +    +r+ +qCk++++ l+k+yk +k++ ++   +s + +p+f++le
  Vradi0023s00720.1  28 CWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVnarhgnAGARARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATAWPFFRRLE 118
                        7*************************************9988766667799*********************99985.677779*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.1E-2626119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSIAGAPPH TANHPSSRPS PFPGREDCWS EEATFTLIEA WGERHLELNR GNLRQRHWQE  60
VADTVNARHG NAGARARRTD VQCKNRIDTL KKKYKIEKAR VSDSGDSATA WPFFRRLEFL  120
IGDNFPAKKP SPPESGSADR RSTPPAKSPA WAPIPTYERV EEAKQRQMVE LEKQRMQFAK  180
DLETQRMKLF METQLHLQKM NRSNSKRSSA TG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0023s00720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522016.11e-113trihelix transcription factor ASIL2
SwissprotQ9LJG85e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S3VUF41e-112A0A1S3VUF4_VIGRR; trihelix transcription factor ASIL2
STRINGXP_007149737.18e-97(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-41sequence-specific DNA binding transcription factors