PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s02340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 142aa    MW: 15762.4 Da    PI: 9.6943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s02340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-192978255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y GVr+++ +gr++AeIrdps+   + r++lg+f+ta+eAa a+++a+++++g
  Vradi0007s02340.1 29 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 78
                       588******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-322992IPR001471AP2/ERF domain
CDDcd000182.28E-272985No hitNo description
Gene3DG3DSA:3.30.730.104.8E-292986IPR001471AP2/ERF domain
PROSITE profilePS5103220.8372986IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-212986IPR016177DNA-binding domain
PfamPF008473.3E-123078IPR001471AP2/ERF domain
PRINTSPR003671.0E-83041IPR001471AP2/ERF domain
PRINTSPR003671.0E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MNPRTTSSSS KTKKKQTAPE PHHTAWGGRY LGVRRRPWGR YAAEIRDPST KERHWLGTFD  60
TADEAALAYD RAARAMRGSR ARTNFVYADT TPGSSLTPII SPDQQPVPQP DPQSDGFYWE  120
GAMSTVSESQ VFELGSSSYF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-202785362ATERF1
3gcc_A3e-202785362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s02340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491082.18e-78ethylene-responsive transcription factor LEP
SwissprotQ9M6441e-41LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A1S3TBE22e-76A0A1S3TBE2_VIGRR; ethylene-responsive transcription factor LEP
STRINGXP_007161805.18e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-23ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]