PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0007s01900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 28248.4 Da PI: 8.1576 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.2 | 3.9e-31 | 93 | 183 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk +r+kC++dC++apyf ++q + fa+vhk+FGa+n++kll +++e +r+++++sl+yeA+ r+ +Pv+G+v+ ++ +l+ ++ Vradi0007s01900.1 93 PCAACKKMRKKCSSDCIFAPYFGSSQgSTLFAAVHKVFGANNLSKLLLEVEEIHRNETINSLCYEAQTRLANPVHGCVASLQ---GELAMVQ 181 7*********************99997899***********************************************97554...4444444 PP DUF260 92 ae 93 ++ Vradi0007s01900.1 182 NQ 183 44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.742 | 92 | 194 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-30 | 93 | 184 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MWQQPRSNFN LIIILIENFF LFLFHLVHET VFRFVIWFHQ EGTRDGENGD MVVAACKRSC 60 IEKLSMANEA QANVEKQKSK VSKCVRSRAS SPPCAACKKM RKKCSSDCIF APYFGSSQGS 120 TLFAAVHKVF GANNLSKLLL EVEEIHRNET INSLCYEAQT RLANPVHGCV ASLQGELAMV 180 QNQLINTQNL YESLLQRTYH QQQPNINVVV QPSANNVMNM SYFNPAFDHL SMQTTPSTVN 240 MDPPQYFFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-22 | 93 | 189 | 11 | 102 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-22 | 93 | 189 | 11 | 102 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0007s01900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-159 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491067.1 | 1e-132 | LOB domain-containing protein 20 | ||||
TrEMBL | A0A1S3TBC9 | 1e-130 | A0A1S3TBC9_VIGRR; LOB domain-containing protein 20 | ||||
STRING | XP_007162000.1 | 9e-94 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28507 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-35 | LOB domain-containing protein 20 |