PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01760.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 308aa    MW: 34998.1 Da    PI: 5.3622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.24e-201311336128
                NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkge 117
                        + +i++++P++Lp  +k++ +  + F+k+ ++yat++rk+r+         ++  W++tg++k++++ +g  +g kk++v++  +++  k+ 
  Vradi0007s01760.1  13 DQGICYTHPENLP-GAKKDGSYFHIFHKTINAYATSQRKRRKihhpqglsEEHWHWHKTGRTKAIMQ-NGMCKGFKKIMVLHvrSKSGAKPF 102
                        4579*********.55566778899****************85665555444667************.999***********6544556667 PP

                NAM 118 ktdWvmheyrl 128
                        k++Wvmh+y+l
  Vradi0007s01760.1 103 KSNWVMHQYHL 113
                        *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.1631132IPR003441NAC domain
SuperFamilySSF1019416.54E-2313132IPR003441NAC domain
PfamPF023654.6E-635113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MFIKEFISTL EGDQGICYTH PENLPGAKKD GSYFHIFHKT INAYATSQRK RRKIHHPQGL  60
SEEHWHWHKT GRTKAIMQNG MCKGFKKIMV LHVRSKSGAK PFKSNWVMHQ YHLGTEKNEK  120
EGEYVVSKIF YQQQKQTEKN EDNAMVEDLD NIVSRTSPRT PKPNPPHPPR AGNSVDCDDC  180
IDETVPLPFV QTILGESHAP ISDVQDLDNS ALLPGESQAK EHTEYDGLDD ILLCKEILDS  240
SDLLNDSGLD SSNLYDLEFY DNQIARNDNE SCGISVLDTL ELDTPDFDHS NLNFCSQYSI  300
LEWMGRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490985.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
TrEMBLA0A1S3TB470.0A0A1S3TB47_VIGRR; SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
STRINGXP_007141004.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-49NAC family protein