PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01630.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 368aa    MW: 41529.2 Da    PI: 6.5888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.74e-52101291121
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdee++++yL++kv+++++++  +i e+d++k+ePwdLpk++k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+
  Vradi0007s01630.1  10 LPPGFRFHPTDEEIITHYLTEKVKDSSFSA-IAIGEADLNKCEPWDLPKRAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEI 100
                        79*************************999.88***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdW 121
                        ++ kg+lvg+kktLvfy+grapkgekt+W
  Vradi0007s01630.1 101 YKGKGNLVGMKKTLVFYRGRAPKGEKTNW 129
                        ***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-537140IPR003441NAC domain
PROSITE profilePS5100546.67510158IPR003441NAC domain
PfamPF023653.5E-2411129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQTGEEPLDL PPGFRFHPTD EEIITHYLTE KVKDSSFSAI AIGEADLNKC EPWDLPKRAK  60
IGEKEWYFFC QKDRKYPTGM RTNRATESGY WKATGKDKEI YKGKGNLVGM KKTLVFYRGR  120
APKGEKTNWD EWVVSRVFHK NTDVKKSSIP GLLRINSIGD DLLDYSSLPP LMDPPYGNTN  180
TNNPLSSTKS QSEGYYLPSF SINNHHQLLI KPEDHHRSYE IPTISYTSNQ ANLSNTVNPV  240
GSNTLSQPSN MFSDYYVHQN RIRSSIMPSI EGSGFGTNHD QAILRAFAAK NNEHLGGILE  300
KQCKMEQFSS NHSQDTGLSN DRNTETSSVV SKQDNMGRNR TLYEDLEGPP PSVAPLSDLE  360
CLQWDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46814615171NO APICAL MERISTEM PROTEIN
1ut4_B1e-46814615171NO APICAL MERISTEM PROTEIN
1ut7_A1e-46814615171NO APICAL MERISTEM PROTEIN
1ut7_B1e-46814615171NO APICAL MERISTEM PROTEIN
3swm_A1e-46814618174NAC domain-containing protein 19
3swm_B1e-46814618174NAC domain-containing protein 19
3swm_C1e-46814618174NAC domain-containing protein 19
3swm_D1e-46814618174NAC domain-containing protein 19
3swp_A1e-46814618174NAC domain-containing protein 19
3swp_B1e-46814618174NAC domain-containing protein 19
3swp_C1e-46814618174NAC domain-containing protein 19
3swp_D1e-46814618174NAC domain-containing protein 19
4dul_A1e-46814615171NAC domain-containing protein 19
4dul_B1e-46814615171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491001.10.0NAC domain-containing protein 100
TrEMBLA0A1S3TB570.0A0A1S3TB57_VIGRR; NAC domain-containing protein 100
STRINGXP_007161814.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-85Arabidopsis NAC domain containing protein 87