PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01420.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 255aa    MW: 29149.2 Da    PI: 9.7298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001397119223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C ++++++ +L  H +  H
  Vradi0007s01420.1  97 SCSVCFRVYPTSRLLSIHVSEvH 119
                        6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.286994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003556.896119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003557134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMEVENNHN QQLGFPFWKP LRRKFGPDSP FFAPGNLERE LLAKQVALEL TEEKEQLEKW  60
MQEEEGREIF CPIVGCGARL TSMDDFENHY NARHTASCSV CFRVYPTSRL LSIHVSEVHD  120
SFFQAKVARG YDMYECLVEK CGLKFKSYNR RHQHLVDKHK FPTSFEFFKK AKPSKKQRLK  180
SQQKKAVPKE KDAGMMEVEN ATVDDLVSAV SKLSTSDSTP SNISFGRRSK GLSFVPRTVQ  240
RRDQSNSAAS GTKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954190.0BT095419.1 Soybean clone JCVI-FLGm-14N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491156.10.0zinc finger protein 511
TrEMBLA0A1S3TBL40.0A0A1S3TBL4_VIGRR; zinc finger protein 511
STRINGXP_007161722.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-103zinc ion binding;nucleic acid binding;zinc ion binding