PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s01260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 480aa    MW: 52095.1 Da    PI: 6.9726
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s01260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.6e-39103162261
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Vradi0007s01260.1 103 PDKILRCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 162
                        7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2994160IPR003851Zinc finger, Dof-type
PfamPF027011.0E-31105161IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.444107161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610109145IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSQTEKDPGI RLFGRKIPVP ECQIPANSGP TDACSSIKKE EELGRPNERG ENSEKQENSS  60
DSRDNKQELE HKVQENEPIV NPKPVEDNTE NGGSDQDKVL KKPDKILRCP RCNSLDTKFC  120
YFNNYNVNQP RHFCKNCQRY WTAGGTMRNV PIGAGRRKNK HLASQYRHII VSSNGIPASK  180
LETEDASGFQ HVTSLESSVP FRSSADSSTV LKFGPDTPLC ESMDSMLNLR DERRCVDASS  240
INRAEYAGEP SLCGSSVTNN ATQGNELSEH KTSNWLQCYP VPPWVLTYPG WNNVSSVEAV  300
HQSSAPMCSP YNTGPGAMQW CPTAMVAIPG MCPPSIPFQV VPPSCWSGTP LWNGAGAVSI  360
GSNACLSPSS STSNSCCSGN GSPTLGKHAR DTVFADEEKS EKCVLVPKTI RTDTSNEASK  420
SPIRAALSIK PDQQHSLSNG DVLKKIEPKE GKDRVLGASQ ILEANPAAIS RAHAFQESI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s01260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491142.10.0cyclic dof factor 2
RefseqXP_022633351.10.0cyclic dof factor 2
TrEMBLA0A1S3TBJ40.0A0A1S3TBJ4_VIGRR; cyclic dof factor 2
STRINGXP_007161893.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-63cycling DOF factor 2