PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0007s01160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CPP | ||||||||
Protein Properties | Length: 259aa MW: 28635.4 Da PI: 6.6306 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 22.9 | 1.8e-07 | 50 | 72 | 16 | 38 |
TCR 16 kYCeCfaagkkCseeCkCedCkN 38 Y eCfaag++C e C+C+dC+ Vradi0007s01160.1 50 SYSECFAAGVYCIEPCSCQDCHE 72 699******************86 PP | |||||||
2 | TCR | 46.5 | 7.4e-15 | 117 | 154 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+g nCkks ClkkYCeC++ g+ Cs C+Ce+CkN Vradi0007s01160.1 117 HKRGRNCKKSICLKKYCECYQGGVGCSIGCRCEGCKNA 154 78899********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 25.493 | 40 | 156 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.4E-4 | 50 | 72 | IPR005172 | CRC domain |
SMART | SM01114 | 6.0E-14 | 116 | 157 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-10 | 121 | 154 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MTSHEVERQV KIALDWLRGN RVEYRRFAAV LILKNYAVYN NPQLYLWTAS YSECFAAGVY 60 CIEPCSCQDC HEDTVFQTRK QIESQNPLAF APKVIRSSDS VLEIGDDPNK TPASARHKRG 120 RNCKKSICLK KYCECYQGGV GCSIGCRCEG CKNAFGRKGS APVSIETEQE ETEATDKGMA 180 EKASQKTEIQ NTEDHPDSAT VSTPLRLSRE VLILINSDAS HNFISQGLVE EMGLVVVDTP 240 SYLVSLGDGQ KKTRGCCE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0007s01160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378645 | 1e-85 | AB378645.1 Lotus japonicus CPP-L56 mRNA for transcription factor CPP, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491017.1 | 1e-113 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
Swissprot | F4JIF5 | 7e-61 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A1S3TB71 | 1e-112 | A0A1S3TB71_VIGRR; protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
STRING | XP_007157112.1 | 8e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 3e-63 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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