PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0007s00950.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 285aa MW: 31665.7 Da PI: 9.6017

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0007s00950.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	165	208	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a+++eLe kv Le+eN++L+ + Vradi0007s00950.1 165 RRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRRQ 208 79***************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.9E-14	158	208	No hit	No description
SMART	SM00338	3.0E-13	161	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.588	163	208	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-13	165	208	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.56E-22	165	216	No hit	No description
SuperFamily	SSF57959	3.0E-11	165	209	No hit	No description
PROSITE pattern	PS00036	0	168	183	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGSQGGAIQE PKNGSLARQG SLYNLTLDEV HNQLGNLGKP LGSMNLDELL KGVWTAESGT 60 DAYMQQGQVV SAGSSLNPQG SLTLCGDLSK KTIDEVWRDM QQKKSVSHER ERQPTLGEMT 120 LEDFLVKAGY SEAMPSSLMG ALSDSQSAGR KRAASGNVVE KTVERRQKRM IKNRESAARS 180 RARKQAYTQE LEIKVSRLEE ENERLRRQNI DNAIWLHNGW LKCWRFNQGS LKLDIGQRLQ 240 EFVTISGEEK SAEKGHKEEI EKVLPSAPPP DPKHQLRRTS SAPL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0007s00950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020208498.1	3e-90	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9C5Q2	1e-70	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A371F566	1e-102	A0A371F566_MUCPR; ABSCISIC ACID-INSENSITIVE 5-like protein 2 (Fragment)
STRING	XP_007161821.1	1e-81	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	4e-66	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]