PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0104s0001.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 866aa    MW: 90082.5 Da    PI: 7.3038
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0104s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP113.41.3e-35397474178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv+gC +dls +keyh+r+++C+vh k ++v+ +g+ qrfCqqC+rfhel+ fD +++sCr++L+khn+rrr++++
  Vocar.0104s0001.1.p 397 VCQVPGCGKDLSGLKEYHQRYRICDVHIKLQQVMKDGRLQRFCQQCGRFHELTAFDGNRKSCRDQLSKHNARRRRRAQ 474
                          6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-29394459IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.299395472IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-31396473IPR004333Transcription factor, SBP-box
PfamPF031101.4E-30398471IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MENLDQTGDD QTWAVEDWNW DPFNMFAAPK ETPNVACCQA LKRRKVDNTA AAQGQPQQQA  60
QQGACCQGPS GSIRAGGQPP AAAAACCSFT PNQTQAMQQL TGPLQAAMNS LAPQKAVVET  120
CAVSSMCHGP GAMVPPAAVP AAAPVAATGP QMLNVNMGMA LPAGMGWAGL GDMSSPAASA  180
AAAAMAAAVD MPGFFTSMTG GTGRPLAGMG WGIQPMALQM PSMPMQPFPG SHAQCAPALS  240
MPASGFPTPS GVFQQQASMA LPPSSVPSPA LGSSGETSSL QGSADNAKAL CCSGNRGGGG  300
PTCSGGRQQA DSSNKASMPL PNKAHQTGAT GGRGADGAMV GGDLSDFAIS DSEDEDEVGR  360
RGPLGNNRGN GAHHQQHQYL GDVIALHDVG DDNGLMVCQV PGCGKDLSGL KEYHQRYRIC  420
DVHIKLQQVM KDGRLQRFCQ QCGRFHELTA FDGNRKSCRD QLSKHNARRR RRAQAEQAKG  480
KSAAVDPFAV GAVGCGAAAA ANGGATASFD GDVGKLLTCL MQNPSQLHAL RLLLGVPTHP  540
ALPASHPAPG LGLGVGLGSG SPADSSSDGS DQARTYALAR DIMGARNEFA PAFESEHRLI  600
RLSMKLFNRT PADLPSDLRN QVNSWLASAP AGMEASIRPG CVFLTVQMLV DEAGEAQAMA  660
PGALGSLAQH LLTRTGCPFW HTGMYTLQLH EDIMLVRDGR VSCDAASANG DGRFPVIRRL  720
GPLAAVAGQP VTLKLHGQHL DAPNCLVIVR WGAQHLKAHM QPLSAHRAIV RLPPLPELCG  780
PVWVELMRGA YLSPAKQMLV ARNEALVEEI NKLDVRYGPL SQETVELMLQ DMAIVLQHIA  840
GEQGAGAQLP HAAIALKVRH ALGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-21393471684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002948544.10.0hypothetical protein VOLCADRAFT_58461
TrEMBLD8TPU20.0D8TPU2_VOLCA; Uncharacterized protein
STRINGXP_002948544.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP550058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-21SBP family protein