PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0078s0011.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ARR-B
Protein Properties Length: 835aa    MW: 84162.4 Da    PI: 6.2491
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0078s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.3e-28235288155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ e+H++Fv+av+qL G++kA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
  Vocar.0078s0011.1.p 235 KARVVWSVEMHQQFVNAVNQL-GIDKAVPKKILEIMNVDGLTRENVASHLQKYRL 288
                          68*******************.********************************8 PP
2Response_reg78.81.9e-26301381109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l+vdD+pl +++++q+l+k  y +v+++++++ al+ll++k   +Dl+l D+ mp+mdG++ll+     e++lp+i+++++g+ + +l+
  Vocar.0078s0011.1.p  30 LLVVDDDPLCLKVVEQMLRKCSY-DVTTCTNATMALNLLRDKSteYDLVLSDVYMPDMDGFKLLEVVGL-EMDLPVIMMSSNGDTSNVLR 117
                          599********************.***************998889*******************98855.458***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+  eel++
  Vocar.0078s0011.1.p 118 GVTHGACDYLIKPVRLEELRN 138
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.0E-4227164No hitNo description
SuperFamilySSF521723.27E-3627151IPR011006CheY-like superfamily
SMARTSM004481.9E-3128140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.93929144IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.04E-2631143No hitNo description
PfamPF000726.4E-2331138IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.606.6E-30232293IPR009057Homeodomain-like
PROSITE profilePS5129411.664232291IPR017930Myb domain
SuperFamilySSF466892.33E-19233292IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-25235288IPR006447Myb domain, plants
PfamPF002491.1E-5237287IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MDGRAEGTVA IKQEDHASGH WHNFPAGLRL LVVDDDPLCL KVVEQMLRKC SYDVTTCTNA  60
TMALNLLRDK STEYDLVLSD VYMPDMDGFK LLEVVGLEMD LPVIMMSSNG DTSNVLRGVT  120
HGACDYLIKP VRLEELRNLW QHVVRRRRQL NLDMDSDEHS QERDDDQGRK RKADTAGCIG  180
DQLRMMGAGC SGGANGLGST GNLGAVATGS AGLGLGLGTA ADELGLGLDN GSSKKARVVW  240
SVEMHQQFVN AVNQLGIDKA VPKKILEIMN VDGLTRENVA SHLQKYRLYL KRVSGAQQPG  300
QNRVSRPSPP QPQSPQVPSQ QQQSLPGGGG AAAAGAGQLQ GGGGAAAAAA SLASILAGGG  360
PAGGGAGAGP PPGGGQLGAD GGGPGPGLSS AVANAMSAAA AAGGFPTPPP PPPPHPAALL  420
AANPMMAAAA GLNPLLGAMG GLGVGPLGPL NPLNGMPMPG MQPPLGLLPG LPGPGGQLGL  480
GPLGPIGLPG PGPLPSLPAG LPLNPMANGL QQMAAANLMQ GMAGMGQLPA LSMNGMNGIM  540
GPLPGVGLPG PQQHLFPQQQ QPHLQQQQQQ QQQKDLQMAQ KQHQAAAAAA AVAAAVAAAQ  600
HQQQQPQAQQ QPQPQQQQQQ PGKLPQATVG TPALASPAGA LPRQPSGQHP HTLSSSSLHT  660
QQPHQQQLLH SQPSSTHLAT NNTLAMAPAL NGTLDVGGKG HLHAAGGQGA GAGAGAVLDI  720
PPDLIGGLIE DGFGAPPGPT IQLAHGTAAV LDPTMLLDEG DNSDFAAVFQ EMSSYGGGGV  780
IGGGGSGAGA MGVLGHGLLA AGGPVMVDVA AGLAGVTETA TRVDDDFLNF LLKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22232294264ARR10-B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-83response regulator 2