PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0072s0004.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

WRKY

Protein Properties

Length: 1688aa MW: 173274 Da PI: 6.1627

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0072s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	31.6	3.4e-10	1230	1262	4	38
SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEE CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsagCpvkkkv 38 +y+WrKYG K + g + rsY+rC++ Cp++ + Vocar.0072s0004.1.p 1230 EYRWRKYGEKWIDG--MCRSYFRCSMLYCPARLRA 1262 7*********99..69**********99665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	2.1E-7	1227	1319	IPR003657	WRKY domain
PROSITE profile	PS50811	9.948	1227	1320	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.9E-8	1228	1264	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-9	1228	1266	IPR003657	WRKY domain
Pfam	PF03106	4.8E-7	1230	1264	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1688 aa Download sequence Send to blast
MALPDCSPHR CPLLAPAALT DASASSSALG ITSWLDAAPH PVPTLHTVVN TSPTDLRTSF 60 MVQYKSSTGH LHLASPDRNE ILLALLPKVA VSASTAPTAD SAAASPAAAA TAATTAAATP 120 AWTNSEGTTV AALTAPTMTA PLRPEILAED AWPTAFAAAK GARRGRCKLQ LQLNTELHVT 180 RHTARLEGLR PLMTRWGVRN KEMLTLTLRY DGRLLLSRQR PPGAAEAPAT MVAVAAKAAA 240 VGSGVPLQPE PAAAPPPVCL CRRRGSLLQL PNEAVAWHFA DLAAAVAAKG PQPVEGLWAA 300 VAGTPPPPQP GAQGHDEDPR VALPQSGSLV ELRGVSLCAP KLGRCRIFAL QGLRTVMGSW 360 GLADGAMVQL QPCTTGNSSS HTSSSSGVQK LVLAPLRSMQ VQATADPPGP IRNPAVAGPS 420 RAAAVAVAVG SVGSVGASKG SASADGNAAA AVASAGGAAG TLQDTPCDAV AVADGGGVRV 480 AVAGRRAAAD AGGNGGGSGG GSTAFATTAT APLALPQATT APSQMAVAAP NPSSLSTSML 540 QPRHLQTATL PTVQYQQPQL QLQPLPLLTA TKGVVEEGEE VDEAEETENA MQVEEVQPQP 600 PPSESESGLV PAGTGQHLHW GHMPCDELAM AVDSPSPLET AGECTATESA ERLQQQQQQA 660 GMSSMPPPPG NVLQQPPPPT AAGMSPPTPL SELSPPPPPT ADAAPPPPPP PAAADASSLL 720 LSFALLPLSQ AADTSPPPPP SSQAALSLPA DVPSAPPSPE TAGMSYPPLL ASPPRSASVS 780 LLPPLPLDVA EQEPAGAVPP PPPPLPPPLK TSPLLFVTVP RSPPPATLYP PSQHLPPADA 840 LSLPPSPPSL LEVPVGDPIP ALRQLPLAGT AMSALPPAVR QPLPSEPGNA LQGPLASTDE 900 SPLPLLRDPG LDIHYEDPCT AHVRHFLAAA TEVSPASPDS MILTPRVGGS CCSTEQLPWA 960 VAEMAAADAR LLLMVREAKG DEGGEEVEAV NGQQEEVIGP LSEIAAILLA EGISPVVLQQ 1020 MLPPGQPASP PPPPLPPPLS PRQLQEGVSF PTVPQVPEEA RQWQPPLPLL PYAAAADGAV 1080 QPAAAIPAYD GQWVALPGCA PPPPRRPGGS AGSGRAAAKR GPSSATAGSM YDNDWAPASS 1140 GRCTASAVAT DVTHRRPSSK RRRKNDGTFK PSKPALANVQ HIPAVQPASS SPTLVQPLPS 1200 ACSLHRAVQP PPPPASRARF SVLGRDLPNE YRWRKYGEKW IDGMCRSYFR CSMLYCPARL 1260 RAEWRPSGGG GGGLDGSGGG RGRGANASGG GAGESGGGDG NAGGFILWVS YDAPHNHPPP 1320 PPPPQESEIP DRGRQQPPGE ISPRATADPQ EGHGGPPGTQ LVSSSRTVVQ DQAGEPPPPP 1380 RLILPVHQGG REEGEHGEPQ ARQDNLGFLE ADGGGGGGGG GSGATGGGDV CTEGALDYGH 1440 IWPYHNLTNS SSMLDLDLTA RRPDEAMYGL TDSGFDRRDA VHHHSNNDGN FRTTQHQYPH 1500 QLGSTRSRRQ PAAGKGRRAL VQRQQRQQQG AEGACHGNDD GKHRSGPHRR HSGYSRLQAV 1560 PVRQPIVASH TALADLPGLP SGLDSDLVSE PRSPLVSPAL CSLPPADCSQ QLSPHHHLDV 1620 ATELPRVADG GDGGGGGGGE MRGSLYGSEG RDGWWVGCSS WSFVRQGRWD VWMGVATDVA 1680 TDGLRDV*

Sequence ? help Back to Top

Protein Sequence Length: 1688 aa Download sequence Send to blast

MALPDCSPHR CPLLAPAALT DASASSSALG ITSWLDAAPH PVPTLHTVVN TSPTDLRTSF  60
MVQYKSSTGH LHLASPDRNE ILLALLPKVA VSASTAPTAD SAAASPAAAA TAATTAAATP  120
AWTNSEGTTV AALTAPTMTA PLRPEILAED AWPTAFAAAK GARRGRCKLQ LQLNTELHVT  180
RHTARLEGLR PLMTRWGVRN KEMLTLTLRY DGRLLLSRQR PPGAAEAPAT MVAVAAKAAA  240
VGSGVPLQPE PAAAPPPVCL CRRRGSLLQL PNEAVAWHFA DLAAAVAAKG PQPVEGLWAA  300
VAGTPPPPQP GAQGHDEDPR VALPQSGSLV ELRGVSLCAP KLGRCRIFAL QGLRTVMGSW  360
GLADGAMVQL QPCTTGNSSS HTSSSSGVQK LVLAPLRSMQ VQATADPPGP IRNPAVAGPS  420
RAAAVAVAVG SVGSVGASKG SASADGNAAA AVASAGGAAG TLQDTPCDAV AVADGGGVRV  480
AVAGRRAAAD AGGNGGGSGG GSTAFATTAT APLALPQATT APSQMAVAAP NPSSLSTSML  540
QPRHLQTATL PTVQYQQPQL QLQPLPLLTA TKGVVEEGEE VDEAEETENA MQVEEVQPQP  600
PPSESESGLV PAGTGQHLHW GHMPCDELAM AVDSPSPLET AGECTATESA ERLQQQQQQA  660
GMSSMPPPPG NVLQQPPPPT AAGMSPPTPL SELSPPPPPT ADAAPPPPPP PAAADASSLL  720
LSFALLPLSQ AADTSPPPPP SSQAALSLPA DVPSAPPSPE TAGMSYPPLL ASPPRSASVS  780
LLPPLPLDVA EQEPAGAVPP PPPPLPPPLK TSPLLFVTVP RSPPPATLYP PSQHLPPADA  840
LSLPPSPPSL LEVPVGDPIP ALRQLPLAGT AMSALPPAVR QPLPSEPGNA LQGPLASTDE  900
SPLPLLRDPG LDIHYEDPCT AHVRHFLAAA TEVSPASPDS MILTPRVGGS CCSTEQLPWA  960
VAEMAAADAR LLLMVREAKG DEGGEEVEAV NGQQEEVIGP LSEIAAILLA EGISPVVLQQ  1020
MLPPGQPASP PPPPLPPPLS PRQLQEGVSF PTVPQVPEEA RQWQPPLPLL PYAAAADGAV  1080
QPAAAIPAYD GQWVALPGCA PPPPRRPGGS AGSGRAAAKR GPSSATAGSM YDNDWAPASS  1140
GRCTASAVAT DVTHRRPSSK RRRKNDGTFK PSKPALANVQ HIPAVQPASS SPTLVQPLPS  1200
ACSLHRAVQP PPPPASRARF SVLGRDLPNE YRWRKYGEKW IDGMCRSYFR CSMLYCPARL  1260
RAEWRPSGGG GGGLDGSGGG RGRGANASGG GAGESGGGDG NAGGFILWVS YDAPHNHPPP  1320
PPPPQESEIP DRGRQQPPGE ISPRATADPQ EGHGGPPGTQ LVSSSRTVVQ DQAGEPPPPP  1380
RLILPVHQGG REEGEHGEPQ ARQDNLGFLE ADGGGGGGGG GSGATGGGDV CTEGALDYGH  1440
IWPYHNLTNS SSMLDLDLTA RRPDEAMYGL TDSGFDRRDA VHHHSNNDGN FRTTQHQYPH  1500
QLGSTRSRRQ PAAGKGRRAL VQRQQRQQQG AEGACHGNDD GKHRSGPHRR HSGYSRLQAV  1560
PVRQPIVASH TALADLPGLP SGLDSDLVSE PRSPLVSPAL CSLPPADCSQ QLSPHHHLDV  1620
ATELPRVADG GDGGGGGGGE MRGSLYGSEG RDGWWVGCSS WSFVRQGRWD VWMGVATDVA  1680
TDGLRDV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002959167.1	0.0	hypothetical protein VOLCADRAFT_100569
TrEMBL	D8UKI4	0.0	D8UKI4_VOLCA; Uncharacterized protein
STRING	XP_002959167.1	0.0	(Volvox carteri)

Link Out ? help Back to Top
Phytozome	Vocar.0072s0004.1.p