PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0068s0005.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

HB-other

Protein Properties

Length: 1777aa MW: 185083 Da PI: 5.2429

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0068s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.8	2.9e-16	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++R++ t+ q e+Le+ ++ n++ps e+r+ L +++gLte V WF NrR ++k+ Vocar.0068s0005.1.p 21 KPRQNKTPLQKEVLEASYQLNQHPSVEHRKALGDRIGLTEHEVNAWFTNRRRRDKQ 76 89***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-19	6	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-15	11	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.516	17	77	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	19	81	IPR001356	Homeobox domain
CDD	cd00086	4.76E-14	21	74	No hit	No description
Pfam	PF00046	1.0E-13	21	76	IPR001356	Homeobox domain
SMART	SM00571	0.004	590	650	IPR018501	DDT domain
PROSITE profile	PS50827	12.079	590	650	IPR018501	DDT domain
Pfam	PF02791	7.0E-9	595	645	IPR018501	DDT domain
Pfam	PF05066	8.5E-15	764	831	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.7E-4	1039	1079	IPR028942	WHIM1 domain
Pfam	PF15613	4.3E-15	1217	1290	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1777 aa Download sequence Send to blast
MEPADGSAGG PTDAKAKAPA KPRQNKTPLQ KEVLEASYQL NQHPSVEHRK ALGDRIGLTE 60 HEVNAWFTNR RRRDKQAEKK AAAASLSAGG SAGTPGGVTP GGAGGTSPSP GGAAAAAAPV 120 AGAPAGTLPH VPPVAPSPGA VAASPKPKAP RAPKPPKASP AAVSPGPAVG AAQVVPAPGG 180 PAGLARHVPP PQQLATTAAA AAAASGGAVS CPDAEEETED ADDDASDAAA AAWEGIRALC 240 MAARATLPVP YCEDGPQLGF LFDEPPMPGE LSAAGGGNKR RRIVLGNDLV AEADEEGVKS 300 VLLRRPGGGK AGIQGGGPVG VMTVAELEMR RRELHLQQQA LEEARQDDPD YKSGGRKSED 360 AIKREQERLR KELLRQQEKL ERDRKREEDE RSREMERHER ERKKMADKME KDRAKEEARK 420 LKELEKLKIA EERELKRLEA AREKERKAEE RRRAVEERKK EKENARALAQ QERAVLRMRH 480 RESANGPPDD EELEYRKLLI AAGIDPATVA DADEDAAAAG AAAGEAAASA SVTPPPPPRK 540 RPRPDLPRPE FPPPSLGLEP AWPASYDAEG EAAADGGVGD FGTGPDGLDD DIGSELLVCW 600 SFLQSFADLF GVKVPSLEGL LEALAEGEES RLLADVHCAL LRLIQADMED AHDEKERVGR 660 QTAAAPNFMD RSVVGSARRL EEAWAWGYDV DCWRAHLNAL TWPEVLRQVA VVAGRGRSRP 720 PIRRSAADGT KGPRIQGIEG EDVVDDGSSG GSLKLRMPSR YVLGTVKAAA WQVLASTGPS 780 GLPVAELVRR IQRTGLREMR SSKTPEAVVA GSLARDVLFM RVQPATWALT SVVAFAKRRN 840 EQRRGSRHAA KGGAKTGEAG DGGADGDGDT EMADVSIKGE APEPAAGVKQ EPGLKQEPSA 900 TAAGGGLGSR RRGKAGDAGG SQPMDVDTGT VKQEDVKDEA ATGPAPGPGP ANGRAASVGG 960 AEDISRAATA SPPASTGGAN LGAADVAQGG GSQHQQSQGA GASQQPQLQD HDHDDESYSG 1020 DEEEEDGEAH GGERGAGDPW VNSLLSSGYS TLGLRDRIAA MSFLCHAVLD GPTLRTKLEL 1080 RTNEAAQRRK QVFEDAKNDK RKRQEEAAAR AAAAAEEARK RAEAAAAAAA AGGSGAAAGT 1140 STGGAGGSRG STPAPPGAPV DPKAIAGEIF GTVAAAAPLT EGTKADAARR AEEEEDEKQK 1200 RQQRADEMRR IDEECAIRAE PLGSDRRYNR YWLFTTGEEG DAGSGRLWVE SAPEGTWRLL 1260 TTPQQLDELV ASLEPKGVRE GQLAQALAHH ADRIKRSMPG VAPLSEPTPL DALPEETRAA 1320 LTSAAAARAE VIRLQAYSHV VPDDDYTAEL QLPDSDSISM QRFKRDLLRL ETAVPVEAMD 1380 EGFQRMTWAE RVQTAPSPAV LRTCLGQLEA ALLPSPDGTS PGLLATVFHR HPPLVRGAWV 1440 EVGKEVATAL PGHACKEVLP PAERVDGQPQ AMPSDEPLAW LPATLPALTL RLLSLDASII 1500 FRAGVPPGRD SQAGYKYTVR PAPLDAQPAV VAVSAAAAAG PPHADAAGGP APPASAALPM 1560 AIGGGAVVLT NVLADRGRVN HAIRRVPELP PEIMTLRARE FTLPVEEMRE SVAEADKQGL 1620 LNAASAAAGG KGKGKGAGKG GSAAAANGSS KAGAATTGKV GSRSVVVVSG LRGAAASNKN 1680 KGGSKTKGLS APGVGSRAKG GGKSGGGGAA GGSRGKAAAT ATTEEPEGDE EWMQGTGEQL 1740 GEPVLLGPED EDDLGFSEDN DGLEEGYDDP YDSDYR*

Sequence ? help Back to Top

Protein Sequence Length: 1777 aa Download sequence Send to blast

MEPADGSAGG PTDAKAKAPA KPRQNKTPLQ KEVLEASYQL NQHPSVEHRK ALGDRIGLTE  60
HEVNAWFTNR RRRDKQAEKK AAAASLSAGG SAGTPGGVTP GGAGGTSPSP GGAAAAAAPV  120
AGAPAGTLPH VPPVAPSPGA VAASPKPKAP RAPKPPKASP AAVSPGPAVG AAQVVPAPGG  180
PAGLARHVPP PQQLATTAAA AAAASGGAVS CPDAEEETED ADDDASDAAA AAWEGIRALC  240
MAARATLPVP YCEDGPQLGF LFDEPPMPGE LSAAGGGNKR RRIVLGNDLV AEADEEGVKS  300
VLLRRPGGGK AGIQGGGPVG VMTVAELEMR RRELHLQQQA LEEARQDDPD YKSGGRKSED  360
AIKREQERLR KELLRQQEKL ERDRKREEDE RSREMERHER ERKKMADKME KDRAKEEARK  420
LKELEKLKIA EERELKRLEA AREKERKAEE RRRAVEERKK EKENARALAQ QERAVLRMRH  480
RESANGPPDD EELEYRKLLI AAGIDPATVA DADEDAAAAG AAAGEAAASA SVTPPPPPRK  540
RPRPDLPRPE FPPPSLGLEP AWPASYDAEG EAAADGGVGD FGTGPDGLDD DIGSELLVCW  600
SFLQSFADLF GVKVPSLEGL LEALAEGEES RLLADVHCAL LRLIQADMED AHDEKERVGR  660
QTAAAPNFMD RSVVGSARRL EEAWAWGYDV DCWRAHLNAL TWPEVLRQVA VVAGRGRSRP  720
PIRRSAADGT KGPRIQGIEG EDVVDDGSSG GSLKLRMPSR YVLGTVKAAA WQVLASTGPS  780
GLPVAELVRR IQRTGLREMR SSKTPEAVVA GSLARDVLFM RVQPATWALT SVVAFAKRRN  840
EQRRGSRHAA KGGAKTGEAG DGGADGDGDT EMADVSIKGE APEPAAGVKQ EPGLKQEPSA  900
TAAGGGLGSR RRGKAGDAGG SQPMDVDTGT VKQEDVKDEA ATGPAPGPGP ANGRAASVGG  960
AEDISRAATA SPPASTGGAN LGAADVAQGG GSQHQQSQGA GASQQPQLQD HDHDDESYSG  1020
DEEEEDGEAH GGERGAGDPW VNSLLSSGYS TLGLRDRIAA MSFLCHAVLD GPTLRTKLEL  1080
RTNEAAQRRK QVFEDAKNDK RKRQEEAAAR AAAAAEEARK RAEAAAAAAA AGGSGAAAGT  1140
STGGAGGSRG STPAPPGAPV DPKAIAGEIF GTVAAAAPLT EGTKADAARR AEEEEDEKQK  1200
RQQRADEMRR IDEECAIRAE PLGSDRRYNR YWLFTTGEEG DAGSGRLWVE SAPEGTWRLL  1260
TTPQQLDELV ASLEPKGVRE GQLAQALAHH ADRIKRSMPG VAPLSEPTPL DALPEETRAA  1320
LTSAAAARAE VIRLQAYSHV VPDDDYTAEL QLPDSDSISM QRFKRDLLRL ETAVPVEAMD  1380
EGFQRMTWAE RVQTAPSPAV LRTCLGQLEA ALLPSPDGTS PGLLATVFHR HPPLVRGAWV  1440
EVGKEVATAL PGHACKEVLP PAERVDGQPQ AMPSDEPLAW LPATLPALTL RLLSLDASII  1500
FRAGVPPGRD SQAGYKYTVR PAPLDAQPAV VAVSAAAAAG PPHADAAGGP APPASAALPM  1560
AIGGGAVVLT NVLADRGRVN HAIRRVPELP PEIMTLRARE FTLPVEEMRE SVAEADKQGL  1620
LNAASAAAGG KGKGKGAGKG GSAAAANGSS KAGAATTGKV GSRSVVVVSG LRGAAASNKN  1680
KGGSKTKGLS APGVGSRAKG GGKSGGGGAA GGSRGKAAAT ATTEEPEGDE EWMQGTGEQL  1740
GEPVLLGPED EDDLGFSEDN DGLEEGYDDP YDSDYR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	74	RRRRDK
2	278	282	KRRRI
3	539	543	KRPRP
4	1087	1102	RRKQVFEDAKNDKRKR
5	1700	1707	GGKSGGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002958970.1	0.0	homeodomain protein
TrEMBL	D8UJY3	0.0	D8UJY3_VOLCA; Homeodomain protein
STRING	XP_002958970.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5105	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-26	homeobox-1

Link Out ? help Back to Top
Phytozome	Vocar.0068s0005.1.p