PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0067s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | NF-YB | ||||||||
Protein Properties | Length: 250aa MW: 26084.9 Da PI: 4.1462 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 55 | 1.9e-17 | 10 | 111 | 3 | 97 |
NF-YB 3 eqdrflPianvsrimkkvlPanak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 e+d +P a + ri+k l a a iskda + e fis+++s a+d cq+++r t+n+dd++ al +l f + v+plk Vocar.0067s0020.1.p 10 ETDVDVPRALIKRIVKAKLSALAEdeskdfgISKDALTALSESTKVFISLIASTANDICQEKRRSTVNADDVFNALQDLDFSELVAPLKE 99 67888999********999875533333666*********************************************************** PP NF-YB 86 ylkkyrelegek 97 l+ ++e+ +e+ Vocar.0067s0020.1.p 100 QLEAFKEAVKER 111 *******98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-31 | 5 | 146 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.33E-24 | 12 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-10 | 15 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDTSATEKPE TDVDVPRALI KRIVKAKLSA LAEDESKDFG ISKDALTALS ESTKVFISLI 60 ASTANDICQE KRRSTVNADD VFNALQDLDF SELVAPLKEQ LEAFKEAVKE RNKNRPSKKR 120 KNTVDAQVAV PRNLKQQQYM AQHQNQHAAV AAAPADADAD AVGGVGEVLD GGHGSVVDAG 180 GEPDELQHDA AALDADVTAD VLGGPADDDG LGGLGMGMGL GLVDSDPTCL GDPSDVGVEV 240 EDMLVDAPP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002951737.1 | 1e-178 | hypothetical protein VOLCADRAFT_105243 | ||||
TrEMBL | D8TZI6 | 1e-177 | D8TZI6_VOLCA; Uncharacterized protein | ||||
STRING | XP_002951737.1 | 1e-178 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 9e-25 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0067s0020.1.p |