PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0056s0041.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1200aa MW: 124705 Da PI: 7.2203

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0056s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	112.8	2e-35	421	498	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC +dls +keyh+r+++C+vh k ++v+ +g+ qrfCqqC+rfhel+ fD +++sCr++L+khn+rrr++++ Vocar.0056s0041.1.p 421 VCQVPGCGKDLSGLKEYHQRYRICDVHIKLQQVMKDGRLQRFCQQCGRFHELTAFDGNRKSCRDQLSKHNARRRRRAQ 498 6*************************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-29	418	483	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	28.299	419	496	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-31	420	497	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-30	422	495	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.6E-11	886	1031	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.15E-11	931	1031	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.62E-10	937	1031	No hit	No description
PROSITE profile	PS50297	12.488	939	1038	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1200 aa Download sequence Send to blast
MDLANLFNDE GAGSERTNSI TSSDLDPFLL QGDDQTWAVE DWNWDPFNMF AAPKETPNVA 60 CCQALKRRKV DNTAAAQGQP QQQAQQGACC QGPSGSIRAG GQPPAAAAAC CSFTPNQTQA 120 MQQLTGPLQA AMNSLAPQKA VVETCAVSSM CHGPGAMVPP AAVPAAASVA ATGPQMLNVN 180 MGMALPAGMG WAGLGDMSSP AASAAAAAMA AAVDMPGFFT SMTGGTGRPL AGMGWGIQPM 240 ALQMPSMPMQ PFPGSHAQCA PALSMPASGF PTPSGVFQQQ ASMALPPSSV PSPALGSSGE 300 TSSLQGSADN AKALCCSGNR GGGGPTCSGG RQQADSSNKA SMPLPNKAHQ TGATGGRGAD 360 GAMVGGDLSD FAISDSEDED EVGRRGPLGN NRGNGAHHQQ HQYLGDVIAL HDVGDDNGLM 420 VCQVPGCGKD LSGLKEYHQR YRICDVHIKL QQVMKDGRLQ RFCQQCGRFH ELTAFDGNRK 480 SCRDQLSKHN ARRRRRAQAE QAKGKSAAVD PFAVGAVGCG AAAAANGGAT ASFDGDVGKL 540 LTCLMQNPSQ LHALRLLLGV PTHPALPASH PAPGLGLGVG LGSGSPADSS SDGSDQARTY 600 ALARDIMGAR NEFAPAFESE HRLIRLSMKL FNRTPADLPS DLRNQVNSWL ASAPAGMEAS 660 IRPGCVFLTV QMLVDEAGEA QAMAPGALGS LAQHLLTRTG CPFWHTGMYT LQLHEDIMLV 720 RDGRVSCDAA SANGDGRFPV IRRLGPLAAV AGQPVTLKLH GQHLDAPNCL VIVRWGAQHL 780 KAHMQPLSAH RAIVRLPPLP ELCGPVWVEL MRGAYLSPAK QMLVARNEAL VEEINKLDVR 840 YGPLSQETVE LMLQDMAIVL QHIAGEQGAG AQLPHAAIAL KARRLLAIAC DMGWAAVASA 900 VLPLACARCS CASEMVAAIH AASVPSSASS ASSSSGDKRG LTLLHRAVRS GSIPLLAGML 960 AWGDSHGYRW RVDAAGPAGI TPLHLSAMLD DARVGLLLLD HCGWPAAFTH LKSDNGVTPF 1020 HLAFQMGHYQ VDSLMAILGG LHQIDQHAGA NNAVGAGAQP AGRRSRCGAN AAAMVMGCKA 1080 EENEDVKPAL RGHGHNNTAT AAKNGCCAEL DPCEMCHCTL PPLLLSIMAS CNECGRRRMC 1140 MEAECTGAAD RCGGCCCGTA RPTLRSDSGE VCSSRQHSTV FSITALCQGC HGNRILAVA*

Sequence ? help Back to Top

Protein Sequence Length: 1200 aa Download sequence Send to blast

MDLANLFNDE GAGSERTNSI TSSDLDPFLL QGDDQTWAVE DWNWDPFNMF AAPKETPNVA  60
CCQALKRRKV DNTAAAQGQP QQQAQQGACC QGPSGSIRAG GQPPAAAAAC CSFTPNQTQA  120
MQQLTGPLQA AMNSLAPQKA VVETCAVSSM CHGPGAMVPP AAVPAAASVA ATGPQMLNVN  180
MGMALPAGMG WAGLGDMSSP AASAAAAAMA AAVDMPGFFT SMTGGTGRPL AGMGWGIQPM  240
ALQMPSMPMQ PFPGSHAQCA PALSMPASGF PTPSGVFQQQ ASMALPPSSV PSPALGSSGE  300
TSSLQGSADN AKALCCSGNR GGGGPTCSGG RQQADSSNKA SMPLPNKAHQ TGATGGRGAD  360
GAMVGGDLSD FAISDSEDED EVGRRGPLGN NRGNGAHHQQ HQYLGDVIAL HDVGDDNGLM  420
VCQVPGCGKD LSGLKEYHQR YRICDVHIKL QQVMKDGRLQ RFCQQCGRFH ELTAFDGNRK  480
SCRDQLSKHN ARRRRRAQAE QAKGKSAAVD PFAVGAVGCG AAAAANGGAT ASFDGDVGKL  540
LTCLMQNPSQ LHALRLLLGV PTHPALPASH PAPGLGLGVG LGSGSPADSS SDGSDQARTY  600
ALARDIMGAR NEFAPAFESE HRLIRLSMKL FNRTPADLPS DLRNQVNSWL ASAPAGMEAS  660
IRPGCVFLTV QMLVDEAGEA QAMAPGALGS LAQHLLTRTG CPFWHTGMYT LQLHEDIMLV  720
RDGRVSCDAA SANGDGRFPV IRRLGPLAAV AGQPVTLKLH GQHLDAPNCL VIVRWGAQHL  780
KAHMQPLSAH RAIVRLPPLP ELCGPVWVEL MRGAYLSPAK QMLVARNEAL VEEINKLDVR  840
YGPLSQETVE LMLQDMAIVL QHIAGEQGAG AQLPHAAIAL KARRLLAIAC DMGWAAVASA  900
VLPLACARCS CASEMVAAIH AASVPSSASS ASSSSGDKRG LTLLHRAVRS GSIPLLAGML  960
AWGDSHGYRW RVDAAGPAGI TPLHLSAMLD DARVGLLLLD HCGWPAAFTH LKSDNGVTPF  1020
HLAFQMGHYQ VDSLMAILGG LHQIDQHAGA NNAVGAGAQP AGRRSRCGAN AAAMVMGCKA  1080
EENEDVKPAL RGHGHNNTAT AAKNGCCAEL DPCEMCHCTL PPLLLSIMAS CNECGRRRMC  1140
MEAECTGAAD RCGGCCCGTA RPTLRSDSGE VCSSRQHSTV FSITALCQGC HGNRILAVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-20	417	495	6	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002948544.1	0.0	hypothetical protein VOLCADRAFT_58461
TrEMBL	D8TPU2	0.0	D8TPU2_VOLCA; Uncharacterized protein
STRING	XP_002948544.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5500	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	2e-22	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Vocar.0056s0041.1.p