PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0053s0056.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | HB-other | ||||||||
Protein Properties | Length: 94aa MW: 10936.6 Da PI: 9.0444 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.5e-10 | 34 | 66 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 + ps +e+eeL +k+gLt +qV WF N+R+++ Vocar.0053s0056.1.p 34 PFPSDKEIEELRDKTGLTLSQVADWFSNKRQRY 66 569****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.0E-4 | 8 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 15 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-14 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.93E-9 | 23 | 67 | No hit | No description |
Pfam | PF05920 | 8.8E-11 | 26 | 65 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 10.317 | 34 | 69 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MTMHLLSMET SPKLLPTAAN TMLMNWYTAN LVWPFPSDKE IEELRDKTGL TLSQVADWFS 60 NKRQRYWMQF FNGRKPANRE ESALILREKG VID* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002953036.1 | 4e-40 | hypothetical protein VOLCADRAFT_93696 | ||||
TrEMBL | D8U2T5 | 1e-38 | D8U2T5_VOLCA; Uncharacterized protein | ||||
STRING | XP_002953036.1 | 2e-39 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5451 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 3e-11 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0053s0056.1.p |