PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0053s0055.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | HB-other | ||||||||
Protein Properties | Length: 248aa MW: 27857.3 Da PI: 8.4115 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 5.1e-09 | 167 | 218 | 6 | 54 |
S--HHHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +++ + l +L + + +yp++ee+eeL +++gL rq++ WF N+R + Vocar.0053s0055.1.p 167 KHSVDNLAVLTSWYTAhlvWPYPTKEEKEELGRQTGLAFRQISDWFNNQRRR 218 566666777777776423369*****************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.357 | 159 | 222 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-15 | 161 | 223 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.8E-9 | 161 | 226 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.96E-12 | 162 | 223 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 169 | 222 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-14 | 179 | 218 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MQLKMAVTDP VNAATNFTRG QKKGCLRDVW KCTTDAAAVG VKIDPMSFME RAVGRLNMAH 60 NLHAHTIVRM DGSNPKSMDG SNPKSMDGSN PKSMDGSNPK SMDGSNPKSM DGSNPKSMDG 120 SNPKSMDGSN PKSGMCECEC ECECECDHKD AVEFWRHEIA NRKKSEKHSV DNLAVLTSWY 180 TAHLVWPYPT KEEKEELGRQ TGLAFRQISD WFNNQRRRHW VKHFGDRGAP ANREESERIL 240 RERRVIN* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5451 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-15 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0053s0055.1.p |