PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0042s0082.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | SBP | ||||||||
Protein Properties | Length: 2763aa MW: 287586 Da PI: 6.4393 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 79.2 | 6.1e-25 | 65 | 142 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq++gC adls +++y+rr++vCe+h +++vv + g+e rfC qCs fh l fD +r+Cr++L++ +rr +++ Vocar.0042s0082.1.p 65 RCQADGCMADLSGLRRYFRRYHVCETHIRSQVVHIGGREVRFCDQCSTFHPLAFFDGVRRTCRDKLEQNRMKRRARKQ 142 6*****************************************************************998766665443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-24 | 62 | 127 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 23.059 | 63 | 140 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.14E-22 | 65 | 141 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-25 | 66 | 139 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2763 aa Download sequence Send to blast |
MDNDNPMRTL PSSEQPGAEQ PSDEHRSSSF QAQQQRHNQS IQEGDLRPSV MASATPVVQD 60 TGANRCQADG CMADLSGLRR YFRRYHVCET HIRSQVVHIG GREVRFCDQC STFHPLAFFD 120 GVRRTCRDKL EQNRMKRRAR KQQNANHAGA ITAAALAGAA AAASGNNNGG GGRSDDVDSD 180 DQPANGGGPA AAAGGDDAGP AVRAQGGHSL ARKRQSGTLA QGARRLQPSA RSVAAPDVTK 240 AVKVQRATTG QLGAARAEVW SPESADEEPD MQTPGPGDAG GGHHEDADWG AADMMTREAE 300 MGLGGALGAT LAAADGRDTG FGPAAATATA TAKRGRPWDP VGLAPDWPRV NHQDLRDQEQ 360 LQVAYGAVRD GAMYSPRGQL HGHLGQQGPQ VQVQVRAQTV KVQPLQLVPP LSQHQQQHQH 420 QQHQQHQQRL PMSEWEMETG GVIALERLPQ GAVQGTWRLH GGSAPNLPQE LPASSPKWAP 480 GGDARATWQS VPAIIVPASG TQDSHALPDK SMHDGGMRLA AVGGPTNNGG YQVHVRTPHA 540 ANGAGYPAPN TLGDPGCARD GRVGLPSRVA DQLITYKVDG EGAPAVTLLA QILRTEPEFR 600 QQLPRTSQAG PEPMSPPKIT LHNGGGSGSA DMLAGAAEGL TPAQQAALRL KLDAGLLASP 660 PNATTAAPQP QPPSSVSASA VPGPNMPKQW AQVQDDAPLQ QQRHHHQPLV RHELPGYGTS 720 RPGGQAATVW AGNGAAPQGS VWVTPDGTRF GAPLAAYPAP VGLGPQAVLI DRRISAGSSV 780 YTADEEAALA MEDVTSLQME AERAAIGTHN DALQQPIEEA PSLLDTPSFR DGIARDNADA 840 QMWEARRELQ KQQQQVQIVV SFPNHQNQRQ QLQGFDGEHR VTLLEHMQKQ EAFLEVVQQQ 900 QQEQHLGSQQ QHHSHMLEQH PRGQQHGLRQ NPANSLSHVD RWQQQQQHPQ QLEQQQPASR 960 VQVQLGSSAP PQNVFGKLCD EQRPVYLPSA FRMHVPEDLD ADSDYLQPQP QHAGIAAGAR 1020 ASGRGPVAAV GRPAPLGGIG GGGGQRPPSP APPQPHSWAG ASSGWRYSNG DSGGAPAMLE 1080 AQPQQQSASA IGYGTQQHMQ QLGDSLAGVA PSDQELILST LRKFAAHPPR AVKTAGGAHQ 1140 QQQQQPDSMG LSPSMPQGRG PQDRGGDSGS GGSSGCGGTL HMLRAEEGRA TQQQSYMQQQ 1200 QQRQPPPPQQ QPQQPAHNAA AGGEQLNLRR ESSYNDNING GPGSAEGLQQ VLASEGLQSM 1260 DSLAISEALL DGRGSLQLLD SVVFAQAQDA WVNTDTNPAA ASGADCGPAA MQGGPPTPPP 1320 HGSDGFTFGQ GGRVAGEGER WMGSTSDSQV HARSWQQQGA AAGEGFSGEE WVELPGGGPG 1380 MRVWERHQEQ QHRHVQQHER GPSHGGMFPA TERRPQHQQQ QQQQQGYRPQ SWNERHHHHH 1440 HQQQQQQQQE GLRDGCRPGH ALYTSPYDIN RPLFGGRVTA EGSGGGGGGQ TLSHVALKLS 1500 HARPDSLPME LVERMQEAAR GGGAAVLPAT LREGCVEVLV EVMHSCPTSQ LCNKLFGFPE 1560 ASGGASSALD LELDSALATA SGEQLRAWVG PHVFDSCERV TMQLLRGPVL DCKPGAPPKL 1620 RRWEAAMQDA GLGFAAHWPE VLMLCSGPPV LVADAVNAQQ IQLYGPAELA SPQGVVQLCV 1680 RMAGGAGSLG TVEAVAVDPE DGSSAPIPAD QASTAAPAAV AEGWLQPTTS TTSCWAAARR 1740 SPSPPVWPLA GPLSGLKAPV PGATSPALFR TVNASAGATN RLADLVAMAP RPTEQLKASP 1800 SLATGPCPFY CFAVEEVSEA EGPSSLGMSS RELCVRKGTP PAAGSAPGCT KGTVSETTEH 1860 PRSCFLTAPL PSSLPPSPPV AQQRQHRHQP GCLYNTIATA AATVARQPFS QLLLQQREQP 1920 RQQLQLCCRP PTFHCRSKSD DGCMTLCGSN DSGGRHAGSP SPRVPALASK GESLGRHSTP 1980 SAASHVCAGQ PYGGGGAPLV SVTSATTGLV HCLGPLSRRV SLCSSATLTT AMTLHDRLSC 2040 RSSATTAFTL GTTATLYDRL SLRSEWSWTS NMTSFGGMTA GAACGGGGIN DGGVGGAAPY 2100 SRTNEPQVSE PTYSVGASFG CTDQSLGPAH CARTARDDSK LEEENELMVS TPRRVAGPPA 2160 SCSSPRAVTA ASVAAQPYSS NSSDDASRSG GCCLRTGRLL DSAMVGLRPL RLQLPVLPCA 2220 GLALLEATGG HAVAASWPLL VVETVSQRNE LLALWRELAD AGREDVWREL AADLGLVLGN 2280 LPRRASVCDE PDPYLRSVPA AAAADRAFSS SALGSGEDFG FGGHGASAAV APLRWRSLGT 2340 PDRARDLLPG CYLNSGSLVS IESASQESWG TASATPRLAT AGQAVNTGPV SCMATLVHQR 2400 SSSSSDGDGS GSDVSRVGLP GSATSGASGD SGTSAVCVAD QHTGAGLVAA ATAAAGVGAV 2460 YLAAGAPARS RDGPDAATVD GSHAVRGAGA AAGAPVSAFS SHMATTSFGV GVVGVGGVEE 2520 AQEEGEGKGE QLQLPAVGRT CMLQRGDEVS LASGLAVIRG GCCDCDGEDD LHIASLTSFL 2580 GDLRMTAGRR ESSSDGRGRD DDAAARREGP GLGDGRRSNS SSQESASVLA AVESGTRAET 2640 GDVAVGKGEQ RKIGTAPKEV PGPPGLALPS PSPSLPVPPL AAVGLSAEAR LALQAAVSRV 2700 RRCIDARRLP ALWELLSRVA VDARTGGNTE EEESTSEVGG TAVLGPDEEA AAAVAAVAAA 2760 AV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-14 | 61 | 138 | 6 | 83 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002952986.1 | 0.0 | hypothetical protein VOLCADRAFT_93794 | ||||
TrEMBL | D8U329 | 0.0 | D8U329_VOLCA; Uncharacterized protein | ||||
STRING | XP_002952986.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27360.4 | 1e-17 | squamosa promoter-like 11 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0042s0082.1.p |