PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0042s0081.2.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 405aa    MW: 44191.7 Da    PI: 9.3913
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0042s0081.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP87.22e-2759133276
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                          Cq++gC adls +++y+rr++vCe+h +++v+l++ ++ rfC qCs fh+ls+fD  +r+Cr++L+k   rr kk
  Vocar.0042s0081.2.p  59 CQADGCMADLSGLRRYFRRYHVCETHIRSQVILINSRQVRFCDQCSTFHSLSNFDGMRRTCRDKLEKNRLRRLKK 133
                          ******************************************************************999898776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.5E-2551120IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.2956133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.12E-2457133IPR004333Transcription factor, SBP-box
PfamPF031106.6E-2659132IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MHSFEQPFEL RDTGMQATSG AVMLQWKEQR SSTSGKDTLN TLTTAVVEMS RQRRKGPLCQ  60
ADGCMADLSG LRRYFRRYHV CETHIRSQVI LINSRQVRFC DQCSTFHSLS NFDGMRRTCR  120
DKLEKNRLRR LKKSGLGQTQ ISRSKPDGLL KGHSEEDSGR QTTAAAPSSQ PRRLGAVSTA  180
PPAPAPAPAP AAAANSRKGC SSAFRTNHAG WAAQPSAAAA RDLTACRYYG EDAESRCCRR  240
VEGTAASNLI VRRLQCTMER AQEGTRPARL PKCEMPDSFR ETPKSGRGTS LPVAPERTTS  300
FASSEEIWYQ RIYEAIGSTA SPLQGLTGHG QAPATNPRTP VAFVNAEETE NDTCSRVMRQ  360
AEGPFITSID RSAGHTQAMA AGVLGPMALV FGEGAEDIYL WRGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-14581321084squamosa promoter binding protein-like 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-16SBP family protein