PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0042s0081.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 415aa    MW: 45325 Da    PI: 9.2629
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0042s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP68.99.9e-2259143276
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS-..........-S-STTTT-------S- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek..........rsCrrrLakhnerrrkk 76 
                          Cq++gC adls +++y+rr++vCe+h +++v+l++ ++ rfC qCs fh+ls+fD  +          r+Cr++L+k   rr kk
  Vocar.0042s0081.1.p  59 CQADGCMADLSGLRRYFRRYHVCETHIRSQVILINSRQVRFCDQCSTFHSLSNFDGMRrpqagelfcmRTCRDKLEKNRLRRLKK 143
                          *******************************************************987333333333358*****9988888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-2351117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.78556143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-1957113IPR004333Transcription factor, SBP-box
PfamPF031101.5E-2259142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MHSFEQPFEL RDTGMQATSG AVMLQWKEQR SSTSGKDTLN TLTTAVVEMS RQRRKGPLCQ  60
ADGCMADLSG LRRYFRRYHV CETHIRSQVI LINSRQVRFC DQCSTFHSLS NFDGMRRPQA  120
GELFCMRTCR DKLEKNRLRR LKKSGLGQTQ ISRSKPDGLL KGHSEEDSGR QTTAAAPSSQ  180
PRRLGAVSTA PPAPAPAPAP AAAANSRKGC SSAFRTNHAG WAAQPSAAAA RDLTACRYYG  240
EDAESRCCRR VEGTAASNLI VRRLQCTMER AQEGTRPARL PKCEMPDSFR ETPKSGRGTS  300
LPVAPERTTS FASSEEIWYQ RIYEAIGSTA SPLQGLTGHG QAPATNPRTP VAFVNAEETE  360
NDTCSRVMRQ AEGPFITSID RSAGHTQAMA AGVLGPMALV FGEGAEDIYL WRGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-11581421084squamosa promoter binding protein-like 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-15SBP family protein