PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0042s0048.4.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

AP2

Protein Properties

Length: 2153aa MW: 208036 Da PI: 6.9277

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0042s0048.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41	4.8e-13	639	688	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV+ ++++gr++A+I++ ++ ++g++gt eAa a+++ ++l+g Vocar.0042s0048.4.p 639 TQYKGVSLYRRTGRYEAHIWHE-----GRQLHIGTYGTDVEAALAYDRVSRYLRG 688 58*****************5.....4******99*******999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.68E-12	639	696	No hit	No description
Pfam	PF00847	6.9E-8	640	688	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.236	640	696	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-16	640	702	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-12	640	697	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-13	640	697	IPR016177	DNA-binding domain
Gene3D	G3DSA:1.10.510.10	8.4E-5	1711	1755	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2153 aa Download sequence Send to blast
MSPPPTHSTT ESRMAPPSQS STPSGDVDGS GCDRLAGGCG DGPGAVVFGN GGVAAAARAA 60 ATAAAAAAAA AAASHAAARR ISRTTNLPSA AAMAAAQSPP EDGGKGAADT ARASAAAAAA 120 AAAAAAAAGR SPVSGSNKAR PLYGERPSPL SPSSASPSAA PSPTASTAGP NAHATSAAVA 180 AAAAAAAAAA AVARPSSLTS PAAAAAAANH QPPASPVCRS DTRQGPAAVQ APTPQPLQLR 240 QAASQRMESS CTTGVATAAA AAVTMAAEVA VRQRLSQRSI GIKTGDVIVS GTGGDGGNGA 300 VRHVGDVENG CVGRGGDGVA RVRDEPVQAV AAAAAAAATV IEADGDAPNF CWSNSSPRLL 360 RAQSRQLQAA TSGRCSVPAA AAAAAVPRCR SPRRACPKAR GVTATAAAAA AAAAVSALAL 420 HKAEGRGGLA TSAPAHGPLG GPGDGDGDGG VGDDDAVASA SGGGGGRVAA AADNDDDNDD 480 DDGGNHDGHN EQGNSLRVSV GRDGGVAAAA GGGCGGGGGS CEVASSLPVL LAEWHLEKQT 540 TQTVDVRQGT ASRPHLVARR ASGGGVAAAA LRAAAAAAAA TQADGGGGGS SVAASGAVAA 600 AARASSAMEA AAAAPAVVEA AAGAVPSRVM GRGPRNRSTQ YKGVSLYRRT GRYEAHIWHE 660 GRQLHIGTYG TDVEAALAYD RVSRYLRGPG AVLNFPTEAA ATATAAAAAA AAAPTFAASG 720 GGGNGEKTAC PKAAAAVTAV RQGGSGPAAA ASVRHHQGAD RVRCAQSVAE PAVAATAATA 780 ATAATAATAA TAATADADAT AAATGEGGMG VDKGSGSRCA GNSHYAGTHQ TLIVEQAPNG 840 VAVGTTLSST TLGRGGGGAG RGIAAFVKPW PNSLAVSNVR GLGSAAGSGK AGGDGAGAAG 900 EAAAAAAAAA AVVRSVRRRI SAMEPLSAPH FPVPPSALPR AASIPDLRTA AGTVAAASSE 960 IRGDYNGGGG DGGSGDCSRR CSQEYGKVFC TRPAPAAILG DDAGGGVGGG SGSGSGSGSG 1020 DDMKYRVHGS GANTGKCSAS ADGGGAADDR VVQFAEEDAW AVVGVRAALP RIAFPGGVVD 1080 LAPPPPPPPL LWPSMLQLEP QQQLPPTPAL PAPFHQTHIA ATAAAAHTCD AVNKQPSYAA 1140 AMRSGLKGGW EVATTAAVTT AAVTAAADVA FSGHCKDYNQ AVQPLYGSGG VGEDASAHLD 1200 ERAAGAVVPG TACTAIRYAS DIVVPIAAGQ LDPGYGVPAE SVAAVPPPPS LPPSLPPPLP 1260 RQLQGRQSTA GRDDTVGDGS GGGGSKRRVA NSVVLQSLLS AGVPADLLRA VLKHTTTATA 1320 DASGSGDGGA TDVVATAASP PGVPPPLPPP PQEQTDIRMA VPMGIDLGTD GSTAAATVAM 1380 SRGCPQLQRT SALPPPPPPP LAQPYLPSPH YHHHYHGVSD QFVTAATTAV MAAAPPLPAR 1440 PAPSRPSTAA INLQKDAAVA AIMSHLARHP PPPPPPQQQQ PWTLQPPPTA TRSGRCTAPD 1500 PSAATAAASA NTATAAIAAA STAASESRPY GTAGGGKVED LRSSGPEDAT PLLPGVSPLA 1560 TANQQQQHAT DAVVLRMQHP AVLQPQSSRP TEFKSDADGV CTTPASLLQS SCASAALAVL 1620 PGVAAAAATA TQVPSAATAA QPEDVRTNGL SASGAAAATG GGGGDGGSST GTSSRLFWVG 1680 GQLHGLGGAL LDFLHPPPIT QSSIRSLLLS HRQQQQQQQQ QEQQQQQQEQ QQQQQEQQQQ 1740 QQEQQQQQQQ QQQQQQSSGA AAMASAAAAN MFTAQAIVDG VGGSTAAEAG CSGGGGVSSL 1800 RPATAVATEP DPKAMLAESL DATAAAAATA AATATATAGS HAAEAAVMRT RTAPEADRSC 1860 LASAAIDPWE VSALTEAWLG ACGRVGHGGV GIGGVVHRSL TAPSLPSQRL AKFSLTPGPY 1920 KRPREDSGSS SRSSGKDGGG GGGNGSGSGG GGVTADTAAT ATAVAVAADN KASDVAVDAV 1980 DAATLDEPSG GPEPMCIDSQ EGNYEMGPAM DTSAECTKVR TECSGQLAVA NNIAAGGGEA 2040 LAAPSGFREH RGVASSSSSS SNGGGGGGGG GGGGGGGGGG SAGEWGWRGP EGLTAATSLR 2100 THPDKKTRLL YGMYRGGGLS GGSGSRSAGG GGGGGGGCGR GGGAAADGEP PT*

Sequence ? help Back to Top

Protein Sequence Length: 2153 aa Download sequence Send to blast

MSPPPTHSTT ESRMAPPSQS STPSGDVDGS GCDRLAGGCG DGPGAVVFGN GGVAAAARAA  60
ATAAAAAAAA AAASHAAARR ISRTTNLPSA AAMAAAQSPP EDGGKGAADT ARASAAAAAA  120
AAAAAAAAGR SPVSGSNKAR PLYGERPSPL SPSSASPSAA PSPTASTAGP NAHATSAAVA  180
AAAAAAAAAA AVARPSSLTS PAAAAAAANH QPPASPVCRS DTRQGPAAVQ APTPQPLQLR  240
QAASQRMESS CTTGVATAAA AAVTMAAEVA VRQRLSQRSI GIKTGDVIVS GTGGDGGNGA  300
VRHVGDVENG CVGRGGDGVA RVRDEPVQAV AAAAAAAATV IEADGDAPNF CWSNSSPRLL  360
RAQSRQLQAA TSGRCSVPAA AAAAAVPRCR SPRRACPKAR GVTATAAAAA AAAAVSALAL  420
HKAEGRGGLA TSAPAHGPLG GPGDGDGDGG VGDDDAVASA SGGGGGRVAA AADNDDDNDD  480
DDGGNHDGHN EQGNSLRVSV GRDGGVAAAA GGGCGGGGGS CEVASSLPVL LAEWHLEKQT  540
TQTVDVRQGT ASRPHLVARR ASGGGVAAAA LRAAAAAAAA TQADGGGGGS SVAASGAVAA  600
AARASSAMEA AAAAPAVVEA AAGAVPSRVM GRGPRNRSTQ YKGVSLYRRT GRYEAHIWHE  660
GRQLHIGTYG TDVEAALAYD RVSRYLRGPG AVLNFPTEAA ATATAAAAAA AAAPTFAASG  720
GGGNGEKTAC PKAAAAVTAV RQGGSGPAAA ASVRHHQGAD RVRCAQSVAE PAVAATAATA  780
ATAATAATAA TAATADADAT AAATGEGGMG VDKGSGSRCA GNSHYAGTHQ TLIVEQAPNG  840
VAVGTTLSST TLGRGGGGAG RGIAAFVKPW PNSLAVSNVR GLGSAAGSGK AGGDGAGAAG  900
EAAAAAAAAA AVVRSVRRRI SAMEPLSAPH FPVPPSALPR AASIPDLRTA AGTVAAASSE  960
IRGDYNGGGG DGGSGDCSRR CSQEYGKVFC TRPAPAAILG DDAGGGVGGG SGSGSGSGSG  1020
DDMKYRVHGS GANTGKCSAS ADGGGAADDR VVQFAEEDAW AVVGVRAALP RIAFPGGVVD  1080
LAPPPPPPPL LWPSMLQLEP QQQLPPTPAL PAPFHQTHIA ATAAAAHTCD AVNKQPSYAA  1140
AMRSGLKGGW EVATTAAVTT AAVTAAADVA FSGHCKDYNQ AVQPLYGSGG VGEDASAHLD  1200
ERAAGAVVPG TACTAIRYAS DIVVPIAAGQ LDPGYGVPAE SVAAVPPPPS LPPSLPPPLP  1260
RQLQGRQSTA GRDDTVGDGS GGGGSKRRVA NSVVLQSLLS AGVPADLLRA VLKHTTTATA  1320
DASGSGDGGA TDVVATAASP PGVPPPLPPP PQEQTDIRMA VPMGIDLGTD GSTAAATVAM  1380
SRGCPQLQRT SALPPPPPPP LAQPYLPSPH YHHHYHGVSD QFVTAATTAV MAAAPPLPAR  1440
PAPSRPSTAA INLQKDAAVA AIMSHLARHP PPPPPPQQQQ PWTLQPPPTA TRSGRCTAPD  1500
PSAATAAASA NTATAAIAAA STAASESRPY GTAGGGKVED LRSSGPEDAT PLLPGVSPLA  1560
TANQQQQHAT DAVVLRMQHP AVLQPQSSRP TEFKSDADGV CTTPASLLQS SCASAALAVL  1620
PGVAAAAATA TQVPSAATAA QPEDVRTNGL SASGAAAATG GGGGDGGSST GTSSRLFWVG  1680
GQLHGLGGAL LDFLHPPPIT QSSIRSLLLS HRQQQQQQQQ QEQQQQQQEQ QQQQQEQQQQ  1740
QQEQQQQQQQ QQQQQQSSGA AAMASAAAAN MFTAQAIVDG VGGSTAAEAG CSGGGGVSSL  1800
RPATAVATEP DPKAMLAESL DATAAAAATA AATATATAGS HAAEAAVMRT RTAPEADRSC  1860
LASAAIDPWE VSALTEAWLG ACGRVGHGGV GIGGVVHRSL TAPSLPSQRL AKFSLTPGPY  1920
KRPREDSGSS SRSSGKDGGG GGGNGSGSGG GGVTADTAAT ATAVAVAADN KASDVAVDAV  1980
DAATLDEPSG GPEPMCIDSQ EGNYEMGPAM DTSAECTKVR TECSGQLAVA NNIAAGGGEA  2040
LAAPSGFREH RGVASSSSSS SNGGGGGGGG GGGGGGGGGG SAGEWGWRGP EGLTAATSLR  2100
THPDKKTRLL YGMYRGGGLS GGSGSRSAGG GGGGGGGCGR GGGAAADGEP PT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60120.1	5e-12	target of early activation tagged (EAT) 2

Link Out ? help Back to Top
Phytozome	Vocar.0042s0048.4.p