PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0042s0048.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | AP2 | ||||||||
Protein Properties | Length: 2179aa MW: 210599 Da PI: 6.9742 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41 | 4.9e-13 | 639 | 688 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV+ ++++gr++A+I++ ++ ++g++gt eAa a+++ ++l+g Vocar.0042s0048.3.p 639 TQYKGVSLYRRTGRYEAHIWHE-----GRQLHIGTYGTDVEAALAYDRVSRYLRG 688 58*******************5.....4**********99*********999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.59E-12 | 639 | 696 | No hit | No description |
SMART | SM00380 | 5.7E-16 | 640 | 702 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.236 | 640 | 696 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-12 | 640 | 697 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-13 | 640 | 697 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-8 | 640 | 688 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:1.10.510.10 | 2.4E-5 | 1738 | 1782 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2179 aa Download sequence Send to blast |
MSPPPTHSTT ESRMAPPSQS STPSGDVDGS GCDRLAGGCG DGPGAVVFGN GGVAAAARAA 60 ATAAAAAAAA AAASHAAARR ISRTTNLPSA AAMAAAQSPP EDGGKGAADT ARASAAAAAA 120 AAAAAAAAGR SPVSGSNKAR PLYGERPSPL SPSSASPSAA PSPTASTAGP NAHATSAAVA 180 AAAAAAAAAA AVARPSSLTS PAAAAAAANH QPPASPVCRS DTRQGPAAVQ APTPQPLQLR 240 QAASQRMESS CTTGVATAAA AAVTMAAEVA VRQRLSQRSI GIKTGDVIVS GTGGDGGNGA 300 VRHVGDVENG CVGRGGDGVA RVRDEPVQAV AAAAAAAATV IEADGDAPNF CWSNSSPRLL 360 RAQSRQLQAA TSGRCSVPAA AAAAAVPRCR SPRRACPKAR GVTATAAAAA AAAAVSALAL 420 HKAEGRGGLA TSAPAHGPLG GPGDGDGDGG VGDDDAVASA SGGGGGRVAA AADNDDDNDD 480 DDGGNHDGHN EQGNSLRVSV GRDGGVAAAA GGGCGGGGGS CEVASSLPVL LAEWHLEKQT 540 TQTVDVRQGT ASRPHLVARR ASGGGVAAAA LRAAAAAAAA TQADGGGGGS SVAASGAVAA 600 AARASSAMEA AAAAPAVVEA AAGAVPSRVM GRGPRNRSTQ YKGVSLYRRT GRYEAHIWHE 660 GRQLHIGTYG TDVEAALAYD RVSRYLRGPG AVLNFPTEAA ATATAAAAAA AAAPTFAASG 720 GGGNGEKTAC PKAAAAVTAV RQGGSGPAAA ASVRHHQGRV GLGEGSRVVL RAAGVDGRQQ 780 DGAGADRVRC AQSVAEPAVA ATAATAATAA TAATAATAAT ADADATAAAT GEGGMGVDKG 840 SGSRCAGNSH YAGTHQTLIV EQAPNGVAVG TTLSSTTLGR GGGGAGRGIA AFVKPWPNSL 900 AVSNVRGLGS AAGSGKAGGD GAGAAGEAAA AAAAAAAVVR SVRRRISAME PLSAPHFPVP 960 PSALPRAASI PDLRTAAGTV AAASSEIRGD YNGGGGDGGS GDCSRRCSQE YGKVFCTRPA 1020 PAAILGDDAG GGVGGGSGSG SGSGSGDDMK YRVHGSGANT GKCSASADGG GAADDRVVQF 1080 AEEDAWAVVG VRAALPRIAF PGGVVDLAPP PPPPPLLWPS MLQLEPQQQL PPTPALPAPF 1140 HQTHIAATAA AAHTCDAVNK QPSYAAAMRS GLKGGWEVAT TAAVTTAAVT AAADVAFSGH 1200 CKDYNQAVQP LYGSGGVGED ASAHLDERAA GAVVPGTACT AIRYASDIVV PIAAGQLDPG 1260 YGVPAESVAA VPPPPSLPPS LPPPLPRQLQ GRQSTAGRDD TVGDGSGGGG SKRRVANSVV 1320 LQSLLSAGVP ADLLRAVLKH TTTATADASG SGDGGATDVV ATAASPPGVP PPLPPPPQEQ 1380 TDIRMAVPMG IDLGTDGSTA AATVAMSRGC PQLQRTSALP PPPPPPLAQP YLPSPHYHHH 1440 YHGVSDQFVT AATTAVMAAA PPLPARPAPS RPSTAAINLQ KDAAVAAIMS HLARHPPPPP 1500 PPQQQQPWTL QPPPTATRSG RCTAPDPSAA TAAASANTAT AAIAAASTAA SESRPYGTAG 1560 GGKVEDLRSS GPEDATPLLP GVSPLATANQ QQQHATDAVV LRMQHPAVLQ PQSSRPTEFK 1620 SDADGVCTTP ASLLQSSCAS AALAVLPGVA AAAATATQVP SAATAAQPED VRTNGLSASG 1680 AAAATGGGGG DGGSSTGTSS RLFWVGGQLH GLGGALLDFL HPPPITQSSI RSLLLSHRQQ 1740 QQQQQQQEQQ QQQQEQQQQQ QEQQQQQQEQ QQQQQQQQQQ QQSSGAAAMA SAAAANMFTA 1800 QAIVDGVGGS TAAEAGCSGG GGVSSLRPAT AVATEPDPKA MLAESLDATA AAAATAAATA 1860 TATAGSHAAE AAVMRTRTAP EADRSCLASA AIDPWEVSAL TEAWLGACGR VGHGGVGIGG 1920 VVHRSLTAPS LPSQRLAKFS LTPGPYKRPR EDSGSSSRSS GKDGGGGGGN GSGSGGGGVT 1980 ADTAATATAV AVAADNKASD VAVDAVDAAT LDEPSGGPEP MCIDSQEGNY EMGPAMDTSA 2040 ECTKVRTECS GQLAVANNIA AGGGEALAAP SGFREHRGVA SSSSSSSNGG GGGGGGGGGG 2100 GGGGGGSAGE WGWRGPEGLT AATSLRTHPD KKTRLLYGMY RGGGLSGGSG SRSAGGGGGG 2160 GGGCGRGGGA AADGEPPT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60120.1 | 5e-12 | target of early activation tagged (EAT) 2 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0042s0048.3.p |