PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0042s0048.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

AP2

Protein Properties

Length: 2179aa MW: 210599 Da PI: 6.9742

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0042s0048.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41	4.9e-13	639	688	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV+ ++++gr++A+I++ ++ ++g++gt eAa a+++ ++l+g Vocar.0042s0048.1.p 639 TQYKGVSLYRRTGRYEAHIWHE-----GRQLHIGTYGTDVEAALAYDRVSRYLRG 688 58*****************5.....4******99*******999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.59E-12	639	696	No hit	No description
SMART	SM00380	5.7E-16	640	702	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.236	640	696	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-12	640	697	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-13	640	697	IPR016177	DNA-binding domain
Pfam	PF00847	7.0E-8	640	688	IPR001471	AP2/ERF domain
Gene3D	G3DSA:1.10.510.10	2.4E-5	1738	1782	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2179 aa Download sequence Send to blast
MSPPPTHSTT ESRMAPPSQS STPSGDVDGS GCDRLAGGCG DGPGAVVFGN GGVAAAARAA 60 ATAAAAAAAA AAASHAAARR ISRTTNLPSA AAMAAAQSPP EDGGKGAADT ARASAAAAAA 120 AAAAAAAAGR SPVSGSNKAR PLYGERPSPL SPSSASPSAA PSPTASTAGP NAHATSAAVA 180 AAAAAAAAAA AVARPSSLTS PAAAAAAANH QPPASPVCRS DTRQGPAAVQ APTPQPLQLR 240 QAASQRMESS CTTGVATAAA AAVTMAAEVA VRQRLSQRSI GIKTGDVIVS GTGGDGGNGA 300 VRHVGDVENG CVGRGGDGVA RVRDEPVQAV AAAAAAAATV IEADGDAPNF CWSNSSPRLL 360 RAQSRQLQAA TSGRCSVPAA AAAAAVPRCR SPRRACPKAR GVTATAAAAA AAAAVSALAL 420 HKAEGRGGLA TSAPAHGPLG GPGDGDGDGG VGDDDAVASA SGGGGGRVAA AADNDDDNDD 480 DDGGNHDGHN EQGNSLRVSV GRDGGVAAAA GGGCGGGGGS CEVASSLPVL LAEWHLEKQT 540 TQTVDVRQGT ASRPHLVARR ASGGGVAAAA LRAAAAAAAA TQADGGGGGS SVAASGAVAA 600 AARASSAMEA AAAAPAVVEA AAGAVPSRVM GRGPRNRSTQ YKGVSLYRRT GRYEAHIWHE 660 GRQLHIGTYG TDVEAALAYD RVSRYLRGPG AVLNFPTEAA ATATAAAAAA AAAPTFAASG 720 GGGNGEKTAC PKAAAAVTAV RQGGSGPAAA ASVRHHQGRV GLGEGSRVVL RAAGVDGRQQ 780 DGAGADRVRC AQSVAEPAVA ATAATAATAA TAATAATAAT ADADATAAAT GEGGMGVDKG 840 SGSRCAGNSH YAGTHQTLIV EQAPNGVAVG TTLSSTTLGR GGGGAGRGIA AFVKPWPNSL 900 AVSNVRGLGS AAGSGKAGGD GAGAAGEAAA AAAAAAAVVR SVRRRISAME PLSAPHFPVP 960 PSALPRAASI PDLRTAAGTV AAASSEIRGD YNGGGGDGGS GDCSRRCSQE YGKVFCTRPA 1020 PAAILGDDAG GGVGGGSGSG SGSGSGDDMK YRVHGSGANT GKCSASADGG GAADDRVVQF 1080 AEEDAWAVVG VRAALPRIAF PGGVVDLAPP PPPPPLLWPS MLQLEPQQQL PPTPALPAPF 1140 HQTHIAATAA AAHTCDAVNK QPSYAAAMRS GLKGGWEVAT TAAVTTAAVT AAADVAFSGH 1200 CKDYNQAVQP LYGSGGVGED ASAHLDERAA GAVVPGTACT AIRYASDIVV PIAAGQLDPG 1260 YGVPAESVAA VPPPPSLPPS LPPPLPRQLQ GRQSTAGRDD TVGDGSGGGG SKRRVANSVV 1320 LQSLLSAGVP ADLLRAVLKH TTTATADASG SGDGGATDVV ATAASPPGVP PPLPPPPQEQ 1380 TDIRMAVPMG IDLGTDGSTA AATVAMSRGC PQLQRTSALP PPPPPPLAQP YLPSPHYHHH 1440 YHGVSDQFVT AATTAVMAAA PPLPARPAPS RPSTAAINLQ KDAAVAAIMS HLARHPPPPP 1500 PPQQQQPWTL QPPPTATRSG RCTAPDPSAA TAAASANTAT AAIAAASTAA SESRPYGTAG 1560 GGKVEDLRSS GPEDATPLLP GVSPLATANQ QQQHATDAVV LRMQHPAVLQ PQSSRPTEFK 1620 SDADGVCTTP ASLLQSSCAS AALAVLPGVA AAAATATQVP SAATAAQPED VRTNGLSASG 1680 AAAATGGGGG DGGSSTGTSS RLFWVGGQLH GLGGALLDFL HPPPITQSSI RSLLLSHRQQ 1740 QQQQQQQEQQ QQQQEQQQQQ QEQQQQQQEQ QQQQQQQQQQ QQSSGAAAMA SAAAANMFTA 1800 QAIVDGVGGS TAAEAGCSGG GGVSSLRPAT AVATEPDPKA MLAESLDATA AAAATAAATA 1860 TATAGSHAAE AAVMRTRTAP EADRSCLASA AIDPWEVSAL TEAWLGACGR VGHGGVGIGG 1920 VVHRSLTAPS LPSQRLAKFS LTPGPYKRPR EDSGSSSRSS GKDGGGGGGN GSGSGGGGVT 1980 ADTAATATAV AVAADNKASD VAVDAVDAAT LDEPSGGPEP MCIDSQEGNY EMGPAMDTSA 2040 ECTKVRTECS GQLAVANNIA AGGGEALAAP SGFREHRGVA SSSSSSSNGG GGGGGGGGGG 2100 GGGGGGSAGE WGWRGPEGLT AATSLRTHPD KKTRLLYGMY RGGGLSGGSG SRSAGGGGGG 2160 GGGCGRGGGA AADGEPPT*

Sequence ? help Back to Top

Protein Sequence Length: 2179 aa Download sequence Send to blast

MSPPPTHSTT ESRMAPPSQS STPSGDVDGS GCDRLAGGCG DGPGAVVFGN GGVAAAARAA  60
ATAAAAAAAA AAASHAAARR ISRTTNLPSA AAMAAAQSPP EDGGKGAADT ARASAAAAAA  120
AAAAAAAAGR SPVSGSNKAR PLYGERPSPL SPSSASPSAA PSPTASTAGP NAHATSAAVA  180
AAAAAAAAAA AVARPSSLTS PAAAAAAANH QPPASPVCRS DTRQGPAAVQ APTPQPLQLR  240
QAASQRMESS CTTGVATAAA AAVTMAAEVA VRQRLSQRSI GIKTGDVIVS GTGGDGGNGA  300
VRHVGDVENG CVGRGGDGVA RVRDEPVQAV AAAAAAAATV IEADGDAPNF CWSNSSPRLL  360
RAQSRQLQAA TSGRCSVPAA AAAAAVPRCR SPRRACPKAR GVTATAAAAA AAAAVSALAL  420
HKAEGRGGLA TSAPAHGPLG GPGDGDGDGG VGDDDAVASA SGGGGGRVAA AADNDDDNDD  480
DDGGNHDGHN EQGNSLRVSV GRDGGVAAAA GGGCGGGGGS CEVASSLPVL LAEWHLEKQT  540
TQTVDVRQGT ASRPHLVARR ASGGGVAAAA LRAAAAAAAA TQADGGGGGS SVAASGAVAA  600
AARASSAMEA AAAAPAVVEA AAGAVPSRVM GRGPRNRSTQ YKGVSLYRRT GRYEAHIWHE  660
GRQLHIGTYG TDVEAALAYD RVSRYLRGPG AVLNFPTEAA ATATAAAAAA AAAPTFAASG  720
GGGNGEKTAC PKAAAAVTAV RQGGSGPAAA ASVRHHQGRV GLGEGSRVVL RAAGVDGRQQ  780
DGAGADRVRC AQSVAEPAVA ATAATAATAA TAATAATAAT ADADATAAAT GEGGMGVDKG  840
SGSRCAGNSH YAGTHQTLIV EQAPNGVAVG TTLSSTTLGR GGGGAGRGIA AFVKPWPNSL  900
AVSNVRGLGS AAGSGKAGGD GAGAAGEAAA AAAAAAAVVR SVRRRISAME PLSAPHFPVP  960
PSALPRAASI PDLRTAAGTV AAASSEIRGD YNGGGGDGGS GDCSRRCSQE YGKVFCTRPA  1020
PAAILGDDAG GGVGGGSGSG SGSGSGDDMK YRVHGSGANT GKCSASADGG GAADDRVVQF  1080
AEEDAWAVVG VRAALPRIAF PGGVVDLAPP PPPPPLLWPS MLQLEPQQQL PPTPALPAPF  1140
HQTHIAATAA AAHTCDAVNK QPSYAAAMRS GLKGGWEVAT TAAVTTAAVT AAADVAFSGH  1200
CKDYNQAVQP LYGSGGVGED ASAHLDERAA GAVVPGTACT AIRYASDIVV PIAAGQLDPG  1260
YGVPAESVAA VPPPPSLPPS LPPPLPRQLQ GRQSTAGRDD TVGDGSGGGG SKRRVANSVV  1320
LQSLLSAGVP ADLLRAVLKH TTTATADASG SGDGGATDVV ATAASPPGVP PPLPPPPQEQ  1380
TDIRMAVPMG IDLGTDGSTA AATVAMSRGC PQLQRTSALP PPPPPPLAQP YLPSPHYHHH  1440
YHGVSDQFVT AATTAVMAAA PPLPARPAPS RPSTAAINLQ KDAAVAAIMS HLARHPPPPP  1500
PPQQQQPWTL QPPPTATRSG RCTAPDPSAA TAAASANTAT AAIAAASTAA SESRPYGTAG  1560
GGKVEDLRSS GPEDATPLLP GVSPLATANQ QQQHATDAVV LRMQHPAVLQ PQSSRPTEFK  1620
SDADGVCTTP ASLLQSSCAS AALAVLPGVA AAAATATQVP SAATAAQPED VRTNGLSASG  1680
AAAATGGGGG DGGSSTGTSS RLFWVGGQLH GLGGALLDFL HPPPITQSSI RSLLLSHRQQ  1740
QQQQQQQEQQ QQQQEQQQQQ QEQQQQQQEQ QQQQQQQQQQ QQSSGAAAMA SAAAANMFTA  1800
QAIVDGVGGS TAAEAGCSGG GGVSSLRPAT AVATEPDPKA MLAESLDATA AAAATAAATA  1860
TATAGSHAAE AAVMRTRTAP EADRSCLASA AIDPWEVSAL TEAWLGACGR VGHGGVGIGG  1920
VVHRSLTAPS LPSQRLAKFS LTPGPYKRPR EDSGSSSRSS GKDGGGGGGN GSGSGGGGVT  1980
ADTAATATAV AVAADNKASD VAVDAVDAAT LDEPSGGPEP MCIDSQEGNY EMGPAMDTSA  2040
ECTKVRTECS GQLAVANNIA AGGGEALAAP SGFREHRGVA SSSSSSSNGG GGGGGGGGGG  2100
GGGGGGSAGE WGWRGPEGLT AATSLRTHPD KKTRLLYGMY RGGGLSGGSG SRSAGGGGGG  2160
GGGCGRGGGA AADGEPPT*

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11946	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60120.1	5e-12	target of early activation tagged (EAT) 2

Link Out ? help Back to Top
Phytozome	Vocar.0042s0048.1.p