PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0041s0059.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ERF
Protein Properties Length: 1903aa    MW: 182142 Da    PI: 7.0426
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0041s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12389434152
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                          +gy GVr +k +g ++AeIrd        kr +lg+fgta eA  a++aa+  
  Vocar.0041s0059.1.p 389 TGYVGVRMRK-WGMFAAEIRD------GdKRRWLGSFGTAHEAGLAYDAAAIV 434
                          69******99.**********......44*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.58E-19389444No hitNo description
SuperFamilySSF541715.36E-14390446IPR016177DNA-binding domain
PROSITE profilePS5103217.53390445IPR001471AP2/ERF domain
SMARTSM003802.6E-22390451IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-19391445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1903 aa     Download sequence    Send to blast
MMDEIHGSGA CGGGGGGGGG EAAGRSPLSS EMLAMQSGSG APALGNDHLT RATTQSQGVD  60
LANGVSHGGA LQPYHTNNST QDMSQAAAAA AAGSPSNIQL LLGQQGLQGI GPGGGAAAYG  120
SQTQQGGGGG VLTGTMEQMV SGLGSQQQQQ QQQQQQQQQT LPMAPNVLAV LAALTASQSG  180
VTGSNPGAGG GAGGTTGSAA GGAAGGLQLP RAAPLHNVSL STLATLAAKQ QSSGSAAVGA  240
AAGGNGGTAR AGSGGGAAAT GNAGAAGGAA AGGAGTGPLS QLNIQAALVH AAAASALMAA  300
QRSAAAAAAQ HAQGALDGHA VGGGGGAGSD ARKRKRSSPS PPAAGGAGAV ARMVAGGTHH  360
LGGGGGIHLG SLGDGGSEAD KDSPCRNQTG YVGVRMRKWG MFAAEIRDGD KRRWLGSFGT  420
AHEAGLAYDA AAIVQKGTKA KTNFSYLDYE TNPRVGAETM PNVRWDLLPE EVAQQMAARA  480
VPNKAGRLGI GSQASARGPR GSSKGPPSTA AAGGGGGGGG GGGGGGGTSR LGSNSVGNAA  540
AAAAAAAAAV ASNSQLASAA VQAAAAAVAA NPTAAAAVAR QGKGAGAGSN SGQAAAAAAA  600
AAIPTIRPAL AGGQLGSGGT QLAGTGAAGT GPGVPPSAAA PYKGTPAGPT MSAGGSVSTA  660
AAGSAPPLAG PAGGHDLAAG GVGGGAQQDH SMQHHHLALT VVPSDLGAAA AAAAAVAAAA  720
AGAQGPAGTG GILPGGVDNT DMEGPHDQVA TSSDVGQLAQ ARDGPGGSGR RGVGTAAAAA  780
AAGTGPSGYP PDADLQYGPP PHLWPHGAPQ DLHGAPYGPP SMHTLEYGGG PYGAPPPYGA  840
LHPHDPAAAA DDDDMYAQYR MPPPQHLMYP SGMHPHHAGL DPMATEYEEV DEHGVPYAYG  900
YWGYPFTGYD EDGVPVVYEP HGPYRYAPYH MYYAYDEDPE AGPYGPPPPY APHAGPIVLP  960
HSRAAPGPRS DPGLGPAGAL SPDGVPLAPP AVAAVHPRAG YRRHAVTAAG GVAEANGPIA  1020
AGRGSAAGAG AMPAAGGRGG GSGAAAAGGG SAHGPGGHLA DGGGEGGAPQ DADGRMAAAG  1080
GPGQGAGIPG VQDGKQHDPL AALAGVAAAL AGGANGPGAD GAPPTAPSRP GMRQASHGSM  1140
GGDYGYDMYG NSAAAPPGGY PYAYGGAPYP AGAATSGGHP GVGGVGSSRY PPGSRGSGGG  1200
GGGGGGAAAA AAAVPLRAPP APAAAAWYSD PLLPPPKRTS LAGSTRYTPP ATAAGAPHAG  1260
HLIRAGGGAG ASTGGAGGGR SAHVGHLHVR GAAGTGAAAA AAAAYPPYGT AAGHPPAGAP  1320
AAAAAGGVAA GGLGSQGADG EGLGGGGGDP AADGGGGSVE GQEPIPGRGH ALMLPPGYDP  1380
RVVPGGYPPE AMDAMDPYGP PPYGIPYSHS HGGVLLPPGH PSHYYTDANG EPYYFEGPQY  1440
YGVEEEEEEL AAAAAAGHPY AMSYSVPYSV PPSHPHVPPP HVYHPSHGVM PPPSRVPYSR  1500
SGGGGAGGGS SGGGGGGGLG GVLRGPPHPH AHHPHHLGQP PANLPQMDFV DEVGDPGPPP  1560
TEMRMRPVAS HPAAGHGHPH AYPARAAAPG GGAAAAAAGG GGGAHPASAS ADPHGVGHHP  1620
SYPSYTPAHA APGSYPPGRR HVHSGGGSAA AAGPAPLHPG GPGGAALQGF AGGAGGGAAA  1680
AAASHHHHPS HQQHQRSHNH AHTGNHHQQQ QLNQPQQHPQ QQQQQHQQQQ YHQQHHHQGG  1740
GGGGAAAAGL QPPGHMVGAM HPSHQSHHTL HAAAAAAAAQ QQQQQQQQHS PQQQQQQTSQ  1800
HLQHQHQQHQ HQQQPPHHLA QGLEHGGGGG GGGGGGGVGM SDQSELYFQK FHELTQAIKK  1860
VAGDGGVSDG ITGGGGGAGA GAGGAAGLDD VIRNLSFFTN RR*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1254833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-16related to AP2 6l