PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0039s0031.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 942aa MW: 92922.9 Da PI: 4.9068

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0039s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.3	1.2e-06	301	333	5	37
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvke 37 kr++r + NR +A rsR RK++ i eLe v++ Vocar.0039s0031.1.p 301 KRAKRIIANRQSAHRSRMRKLEAIRELELQVAA 333 9***************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0061	297	361	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.06E-6	301	347	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-4	301	350	No hit	No description
CDD	cd14703	2.76E-11	302	328	No hit	No description
PROSITE pattern	PS00036	0	304	319	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MLGEPFLNDA VSSGRRRFRH RKCASDTFAF AASALLDDLP SSMPQPLAVG PLAGQNANQP 60 TTIGETPNPP GGNNLGPELG PADLLEMLRD LDEGGLDIDA GLLEDLDVEG ETDEGHGVML 120 PATNEAVGCQ GGITAPVAGA YTRDALGPTL NLGLLTSPAP AAPPHPTIPP PTSLRPAVTT 180 APLLQQQQQQ QQQTSTASSM LPHGPNGSGG GGSGGGREQR GLNTNSFSTG TAAVAPPPPP 240 PPPPGAAAAA SVPGPRHVRS PSDPLMMCLP SAVQSSAEKP FIEFAGQTRT NALDPALLDP 300 KRAKRIIANR QSAHRSRMRK LEAIRELELQ VAAENAAAEV VRQQVAAAAA ARRELLAAAL 360 RAHRMAADVR GKLAAAAAEQ AALLLNLQGL GVTAATAAAA AAITMVATGP GPDGGGGDDD 420 VSGGPVSVGA PAAGVKGRMA AAAAAAALPP PAITARACGQ GSAATATAVT APRSRGSGGG 480 STTLQYVTAP PAVSPPGLLS ADAALGLDSE PTLSVASGEP GWRQPLPPPL ASPLLLFGEP 540 PKLLDAPPPV LETPLGHSAS MVSMVEATTA AAAAAVTAAA GAPPSPDVFF QRLQHSTIRT 600 PFPSHSGAGA EGPAVAAAAA AAARIGPAAA AAATAIGSMP PSCSLLLAPS SFSFLNSSPH 660 YSPPPPPPLS QHHHHGRQQQ QALLPGASPA LAQLPHQRRP SHHRRHMSAG CAGEAAGTAG 720 LAAYYYSPSA GYGGGGGASC RGFEGSTGQS VPPVLLLPAS SSRTEAAAAA ATAPLGDDTV 780 MAAAIREAAE ATDQPPAEGR PVCLVNTTYS DGSGDGGSGG GDGGDGDGGG VDGGGGDGGR 840 GMDLTAENPW SPMALGGEML VVGFEGGSEE ELHEMTTTTT VMMVATEDAT EEFTAKDEPA 900 VGMGVGTGTG MGVADLGLGL SCSGGGDGGG GGLDVRMAHG A*

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MLGEPFLNDA VSSGRRRFRH RKCASDTFAF AASALLDDLP SSMPQPLAVG PLAGQNANQP  60
TTIGETPNPP GGNNLGPELG PADLLEMLRD LDEGGLDIDA GLLEDLDVEG ETDEGHGVML  120
PATNEAVGCQ GGITAPVAGA YTRDALGPTL NLGLLTSPAP AAPPHPTIPP PTSLRPAVTT  180
APLLQQQQQQ QQQTSTASSM LPHGPNGSGG GGSGGGREQR GLNTNSFSTG TAAVAPPPPP  240
PPPPGAAAAA SVPGPRHVRS PSDPLMMCLP SAVQSSAEKP FIEFAGQTRT NALDPALLDP  300
KRAKRIIANR QSAHRSRMRK LEAIRELELQ VAAENAAAEV VRQQVAAAAA ARRELLAAAL  360
RAHRMAADVR GKLAAAAAEQ AALLLNLQGL GVTAATAAAA AAITMVATGP GPDGGGGDDD  420
VSGGPVSVGA PAAGVKGRMA AAAAAAALPP PAITARACGQ GSAATATAVT APRSRGSGGG  480
STTLQYVTAP PAVSPPGLLS ADAALGLDSE PTLSVASGEP GWRQPLPPPL ASPLLLFGEP  540
PKLLDAPPPV LETPLGHSAS MVSMVEATTA AAAAAVTAAA GAPPSPDVFF QRLQHSTIRT  600
PFPSHSGAGA EGPAVAAAAA AAARIGPAAA AAATAIGSMP PSCSLLLAPS SFSFLNSSPH  660
YSPPPPPPLS QHHHHGRQQQ QALLPGASPA LAQLPHQRRP SHHRRHMSAG CAGEAAGTAG  720
LAAYYYSPSA GYGGGGGASC RGFEGSTGQS VPPVLLLPAS SSRTEAAAAA ATAPLGDDTV  780
MAAAIREAAE ATDQPPAEGR PVCLVNTTYS DGSGDGGSGG GDGGDGDGGG VDGGGGDGGR  840
GMDLTAENPW SPMALGGEML VVGFEGGSEE ELHEMTTTTT VMMVATEDAT EEFTAKDEPA  900
VGMGVGTGTG MGVADLGLGL SCSGGGDGGG GGLDVRMAHG A*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002958352.1	0.0	hypothetical protein VOLCADRAFT_99634
TrEMBL	D8UI68	0.0	D8UI68_VOLCA; Uncharacterized protein
STRING	XP_002958352.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10529	4	4

Link Out ? help Back to Top
Phytozome	Vocar.0039s0031.1.p