PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0037s0095.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | NF-YB | ||||||||
Protein Properties | Length: 223aa MW: 24072.4 Da PI: 4.1367 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 55.7 | 1.2e-17 | 4 | 93 | 3 | 92 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++d lP + +++++k +P + ++++d+ ++v c +efi +v+se+++ + re r i +d ++ al++lGf+ +v ++++ ++e Vocar.0037s0095.1.p 4 DNDVSLPRTTLQKMIKDLVPPDMRVANDTVDLVIACCTEFIQLVSSESNEVATRESRSIIHPDHVVRALTELGFQGFVGEVTAAWDTFKE 93 68999*************************************************************************999988887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.4E-30 | 3 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.79E-27 | 5 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-13 | 8 | 72 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MADDNDVSLP RTTLQKMIKD LVPPDMRVAN DTVDLVIACC TEFIQLVSSE SNEVATRESR 60 SIIHPDHVVR ALTELGFQGF VGEVTAAWDT FKEETKTAHS RKADLRKTGA EHAGLSEEEQ 120 ILLQQQMFAQ ARAQSMTTCE SAAAMHAAYE QAMAAQQQQQ GAPGTGPVGF YSAHQHPTTM 180 TSTTTMPPGE RGGGGGREPP GPADMVEEDD DDDDDDVDDY SE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 4e-30 | 3 | 132 | 10 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002953528.1 | 1e-107 | hypothetical protein VOLCADRAFT_94228 | ||||
TrEMBL | D8U4H0 | 1e-106 | D8U4H0_VOLCA; Uncharacterized protein | ||||
STRING | XP_002953528.1 | 1e-107 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 4e-31 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0037s0095.1.p |