PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0037s0091.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 922aa    MW: 93815.8 Da    PI: 7.7455
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0037s0091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.7e-133382155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GV+w++k+ rW A I         k+++lg+f ++++Aa+a ++a+ kl+g
  Vocar.0037s0091.1.p 33 SRYRGVCWNRKNRRWQAAINSG-----GKYVYLGSFISEQDAARAFDKAAVKLRG 82
                         79****************8883.....4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-143392IPR016177DNA-binding domain
PfamPF008471.0E-63382IPR001471AP2/ERF domain
CDDcd000181.46E-153392No hitNo description
Gene3DG3DSA:3.30.730.104.3E-143490IPR001471AP2/ERF domain
SMARTSM003807.2E-153496IPR001471AP2/ERF domain
PROSITE profilePS5103215.5673490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MRDTKAIIME EDYELGPDAD EGRPCGNEKP LSSRYRGVCW NRKNRRWQAA INSGGKYVYL  60
GSFISEQDAA RAFDKAAVKL RGTRAKLNFS YSEYVDENGN LLEDPKMKNV MYKIEAIQGG  120
TGGQGSGAGG GGSAAAAAGH RGGCSGFKSD GSCYEDQSGY SLHGGTAVAL PLPLPLPHTH  180
EAVSMALSAM EPPPPAHRHL PLIMTGGGGC GGALGGMHAK QHQHPDHLCG GDGGAKSSSD  240
WQSARGGGGG CGGGGGGGAG GLQATLQLNL TASLATGPPQ PPQSLPSVQH QHHQHRLQHL  300
HEGSGEEPPT LFVHLQEGLR TSGACGISHS GAGALGAGGG GGGGGGGGGG GNITRGADGA  360
LAAVADPCGP MPPSSTPSRM QQQHSAVAVA VAQPPPPPSR GRAVPSPPSP RHRAMYGGCP  420
QHGTGGGTLL GTCMSGNGGG SCYDVPPGVG LLTSGHAVSG SAPLPPPPPR VPSLAVQNVL  480
LRELSPSAPG VSFLRFVDNR FNKNPDDTVG VLYLDHRAPG RVGSAVWNGK CVIRMGMYDT  540
ERDACQASIR CMQLNCMFGI DQPSADMFNA MTDFVGPDIV DCAGANQEQY DAAQPPLPYT  600
TRNAAPRGSG NGSMISLGEA PALDLHQAPV SHRHHAAAAA TSPHPHHPGG VYGQRGGGGG  660
ALMSYHGPGG NSVVLSPQPA AAQQQHGQGP PSPGGRGDGG SGGDSQEYGT LYDTKASESG  720
GGEVQVANCS RGSSLSSLLQ VMKHIAGGGG KAGGGDVGGG GVVSSSIHHH HQHQQQHQHH  780
QHQHHHQHQH HHQHQHHQHK QHQNGGDGDG GASGGTASAL GKRGLHGGGG DYVSLAGDLS  840
PVGCPKRHGE PKRIRVDAAA AAAGGGAGGG AGSGGIQLEL RLEPPRRELL EAHKMPLTMV  900
LKTWQQQQQQ QQQQQAAAAA L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1748754GGKAGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953526.10.0hypothetical protein VOLCADRAFT_94225
TrEMBLD8U4G70.0D8U4G7_VOLCA; Uncharacterized protein
STRINGXP_002953526.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.18e-12AP2 family protein