PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0036s0020.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family NF-YC
Protein Properties Length: 293aa    MW: 32404.9 Da    PI: 6.96
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0036s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.61.3e-0814902199
                NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
                         l l r+k+i++++     +  e+  l+++a elf+  l  rs   a    ++ l+   +a+av+  +  +fl+divp++
  Vocar.0036s0020.1.p 14 LDLGRVKRIMQVEARCMTVNPESTFLVCRAAELFLDALIARSN--AVMEGKTELEYHHVAQAVQGWQSAQFLTDIVPTK 90
                         7899*******************************99999995..555567789**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-131688IPR009072Histone-fold
SuperFamilySSF471131.22E-102390IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MADDIGLPGG AEGLDLGRVK RIMQVEARCM TVNPESTFLV CRAAELFLDA LIARSNAVME  60
GKTELEYHHV AQAVQGWQSA QFLTDIVPTK IQAGQLRSDP RFQGKGAVTL PLQFFTPQQQ  120
QQHKLEQQAA TVPSPLPPPP SQKQPKPVAQ PPLAAQQPQQ VQQQPQQQPQ HFQQLQQQQQ  180
ILLQAQLQQQ QMEAQQQLLV QQRQLLLHAQ QQQHQQPLHL TPEQQALHIQ LAAQQQLQYQ  240
QQLQLLILQQ QQQQQQMLLA GQQVLLGGTG AGGFQGADAS GGMGIRAPSD LI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958477.11e-134hypothetical protein VOLCADRAFT_108140
TrEMBLD8UIH71e-133D8UIH7_VOLCA; Uncharacterized protein
STRINGXP_002958477.11e-134(Volvox carteri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-09nuclear factor Y, subunit C10