PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0035s0093.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | NF-YC | ||||||||
Protein Properties | Length: 214aa MW: 22583.8 Da PI: 8.9596 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 34.4 | 4.8e-11 | 81 | 158 | 8 | 85 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 +q e a d+k +lP a +++++ d+++++ sa+a ls a ++f+ + ++ a +krrt++ di+ +v + Vocar.0035s0093.1.p 81 QQQEVAGDLKAAALPSAWVRRVVGLDPEIQRCSADALLALSTAADVFLGAICAKATAAAAGAKRRTVRLDDIERCVRS 158 688999*******************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50118 | 12.51 | 1 | 73 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.7E-14 | 2 | 64 | IPR009071 | High mobility group box domain |
Pfam | PF09011 | 7.9E-11 | 2 | 66 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 1.3E-8 | 2 | 74 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 1.03E-13 | 3 | 64 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.74E-13 | 3 | 58 | No hit | No description |
SuperFamily | SSF47113 | 5.2E-13 | 72 | 159 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-7 | 93 | 156 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-12 | 94 | 161 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAPPTAYMLF CNENREAVRQ KLVAAGHQKV AITLVAKELG QVWKGLSEEE KAAYKTRAEE 60 QQQQEQVAEG DAQQGSPSGE QQQEVAGDLK AAALPSAWVR RVVGLDPEIQ RCSADALLAL 120 STAADVFLGA ICAKATAAAA GAKRRTVRLD DIERCVRSDK RMTAVGLPAV LNMVSAAASN 180 AAETKAVQLG NKKARLEGAA VNNNIMRAFG LAK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002957240.1 | 1e-152 | hypothetical protein VOLCADRAFT_98278 | ||||
TrEMBL | D8UF18 | 1e-151 | D8UF18_VOLCA; Uncharacterized protein | ||||
STRING | XP_002957240.1 | 1e-152 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4674 | 11 | 11 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0035s0093.1.p |