PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0035s0051.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1331aa MW: 138557 Da PI: 6.7959

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0035s0051.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	105.1	5.1e-33	134	210	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls k y++r++vCe h k + +v+g+ rfCqqC+rf el+efD +krsCr rL +hn+rrrk+ Vocar.0035s0051.1.p 134 VCQVEGCGHDLSLEKGYYQRYRVCEPHMKLLSLVVNGKACRFCQQCGRFQELTEFDGNKRSCRARLLQHNARRRKRD 210 6*************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-29	129	196	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	26.325	132	209	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-29	133	210	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-29	135	208	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS50297	9.728	1082	1164	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1331 aa Download sequence Send to blast
MADVFSTSFA AESHTAWAAS QYAWDPSQLQ ALPLAASPAS GSTGAASEHL SEGEIFWTGG 60 VGEIQQTGLI AHVFGNPSLA LVGPCSSAGA QRDQSLGPVP VGWQESTRAG AGGGNAGGKE 120 LKGAHTRAPK GPLVCQVEGC GHDLSLEKGY YQRYRVCEPH MKLLSLVVNG KACRFCQQCG 180 RFQELTEFDG NKRSCRARLL QHNARRRKRD PLETSRKDVS GSRRSKTHHP WSDSSNDADM 240 GHGSGDLSIG MNDKVMTNYS AESGVDQGIK VRMGAAPVSS GGMTTWNVGI NGAVETPAGV 300 NQFQAMLQPP LAVHMHSGAV DADLARCFSG GTDVGDALDE MLDGILNSKT DYLEDPRAAL 360 QAPGAVALPI LGGAFGAAGS GLASGPVSGG SLMSGPEVKP PQLGMMSLAM NSSPPVSGGP 420 MVGTGSLAPS LPTSGTWQQG CMGFDAVGPT ADLAAALNKR ATQQRQLQEH QLLQQLQQQQ 480 LQQQQQLQQQ QKLQQQLLLQ QQQQQQQQLQ QQLLLQQQQQ QQQQKQQLLQ QQLLQQQQLN 540 GMSQGPINTG ASSSVLPMDT FMNSSSSVLT PGYDNSLGNG VLGQLNSNNA PGRGFGGHWG 600 TANMGNTVSM PEVMSGSMQL NSSMGHAAVG MNGIASGMSG MASGMATSGP LVAPPANAAT 660 PASSSFDLAR RLVASGGAAA QYQSEDLLVR VSIKIANCTP DQLPVDLYQR LRNLLNTADA 720 SLVQGFLRPG CTHLVLDVQV DRSARGNAGL DGFGDDGTGS VTIPGLAVSA MDVRKVLGPV 780 VSRSALLVQM ENEVAMWPAG APMGAKPHHS ACVADLQASG QLPVIQHVSP AAYIDGAGRA 840 ALLVFGVGLC TPGVELCARI QGGYVPLTVK RLIEAGQVSV AAAADPKMAV ATARAMLYAK 900 ALERAGRKCE DILLVFVEQA PGTGLLFLEA QTGPLLGNWR PCVLSTDAVI AAELSLCAGR 960 AVRAGAAAMA SLEAFVLDLG RVLDKRSYTT VVPRSQSAVT TEDRLACVDE AEECAIDLPK 1020 AQDSADDGQE FSEATLALVC CCERLLATAT DFSMARVSTF LAGALWQYGQ DVQAILEAPY 1080 ADGLAIVHRC VRSGSAEVVS ALLAWIAFSG ARIDLANVGA LGLSPLHLAA LVPATWPVLA 1140 AVPAARKNWR SARSPLDGAT PLHLQQMLLA QLPRGALPQD LVDAFAPKPR PVAVPGIAQG 1200 SGAITAIENT PSAVPAAGYS GLAAIVSDGN SNGDKTRGDY RRARGAVVLM AIMFVVSVLG 1260 AMIPKRLWAP KASVNGEAVP GAASAQRIFA GCCSTMMYVS LLGLAIQFLP LNKAGVLLSL 1320 FNPTATCLAP *

Sequence ? help Back to Top

Protein Sequence Length: 1331 aa Download sequence Send to blast

MADVFSTSFA AESHTAWAAS QYAWDPSQLQ ALPLAASPAS GSTGAASEHL SEGEIFWTGG  60
VGEIQQTGLI AHVFGNPSLA LVGPCSSAGA QRDQSLGPVP VGWQESTRAG AGGGNAGGKE  120
LKGAHTRAPK GPLVCQVEGC GHDLSLEKGY YQRYRVCEPH MKLLSLVVNG KACRFCQQCG  180
RFQELTEFDG NKRSCRARLL QHNARRRKRD PLETSRKDVS GSRRSKTHHP WSDSSNDADM  240
GHGSGDLSIG MNDKVMTNYS AESGVDQGIK VRMGAAPVSS GGMTTWNVGI NGAVETPAGV  300
NQFQAMLQPP LAVHMHSGAV DADLARCFSG GTDVGDALDE MLDGILNSKT DYLEDPRAAL  360
QAPGAVALPI LGGAFGAAGS GLASGPVSGG SLMSGPEVKP PQLGMMSLAM NSSPPVSGGP  420
MVGTGSLAPS LPTSGTWQQG CMGFDAVGPT ADLAAALNKR ATQQRQLQEH QLLQQLQQQQ  480
LQQQQQLQQQ QKLQQQLLLQ QQQQQQQQLQ QQLLLQQQQQ QQQQKQQLLQ QQLLQQQQLN  540
GMSQGPINTG ASSSVLPMDT FMNSSSSVLT PGYDNSLGNG VLGQLNSNNA PGRGFGGHWG  600
TANMGNTVSM PEVMSGSMQL NSSMGHAAVG MNGIASGMSG MASGMATSGP LVAPPANAAT  660
PASSSFDLAR RLVASGGAAA QYQSEDLLVR VSIKIANCTP DQLPVDLYQR LRNLLNTADA  720
SLVQGFLRPG CTHLVLDVQV DRSARGNAGL DGFGDDGTGS VTIPGLAVSA MDVRKVLGPV  780
VSRSALLVQM ENEVAMWPAG APMGAKPHHS ACVADLQASG QLPVIQHVSP AAYIDGAGRA  840
ALLVFGVGLC TPGVELCARI QGGYVPLTVK RLIEAGQVSV AAAADPKMAV ATARAMLYAK  900
ALERAGRKCE DILLVFVEQA PGTGLLFLEA QTGPLLGNWR PCVLSTDAVI AAELSLCAGR  960
AVRAGAAAMA SLEAFVLDLG RVLDKRSYTT VVPRSQSAVT TEDRLACVDE AEECAIDLPK  1020
AQDSADDGQE FSEATLALVC CCERLLATAT DFSMARVSTF LAGALWQYGQ DVQAILEAPY  1080
ADGLAIVHRC VRSGSAEVVS ALLAWIAFSG ARIDLANVGA LGLSPLHLAA LVPATWPVLA  1140
AVPAARKNWR SARSPLDGAT PLHLQQMLLA QLPRGALPQD LVDAFAPKPR PVAVPGIAQG  1200
SGAITAIENT PSAVPAAGYS GLAAIVSDGN SNGDKTRGDY RRARGAVVLM AIMFVVSVLG  1260
AMIPKRLWAP KASVNGEAVP GAASAQRIFA GCCSTMMYVS LLGLAIQFLP LNKAGVLLSL  1320
FNPTATCLAP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-21	131	208	7	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002957226.1	0.0	hypothetical protein VOLCADRAFT_107563
TrEMBL	D8UEY5	0.0	D8UEY5_VOLCA; Uncharacterized protein
STRING	XP_002957226.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-24	SBP family protein

Link Out ? help Back to Top
Phytozome	Vocar.0035s0051.1.p