PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0034s0019.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 1270aa    MW: 135316 Da    PI: 10.2759
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0034s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA22.31.8e-07178205433
                 GATA   4 CgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                          Cg+ + p+WRr  ++   +Cn CG+yy ++
  Vocar.0034s0019.1.p 178 CGVVEAPQWRRIDRKL--VCNRCGMYYHRH 205
                          **********888444..6********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.3E-4169236IPR000679Zinc finger, GATA-type
CDDcd002021.06E-6172207No hitNo description
Gene3DG3DSA:3.30.50.105.3E-6172206IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.42E-5175218No hitNo description
PROSITE profilePS501148.55178205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1270 aa     Download sequence    Send to blast
MGPADWEHLV DVCINELQSN PRLRVVDAAG VHEVVRTVIF TKAPLYQQLA QIIAGNQANL  60
LEGLLARGLL AQQSQARPSP VAIPQQQQQQ SLTPQPKSPK DPHDRQPVLP LKRPLEPQAT  120
TTPPEASSPS DAAATRQPAE HRSPSVQPSE PKPPVLVIPP KPPAKPLIPG GPCENPFCGV  180
VEAPQWRRID RKLVCNRCGM YYHRHARFPD WTYFNGLASK QAVRHVVVLH RNRQSGSPGP  240
SSGSTPPPQP QPSASASASQ LSPSPQEAPA QVQVNRSATT ETQEQQQQQQ QPGFQRAAPS  300
PTQPQPQAAK GATQLATSGA QEVPGAVDTA AAGKADSGGS TAINNIVGNA GTVHVNTTAT  360
TTEPGTGAGL GGRSSVDTGS GNGSRSSNDG KNNGAATAAV AAAPPAAPAA HGHGNGNGNS  420
GGSNGNNSSS GSGPSAARLA PPSRHILDQD VILKVLTKQY DHLEPSIVRR VHALLEQLQQ  480
EQQQQQQQQQ QQQQQLQQLL LQHLQQQQQR QVQASASADQ DGKVAACFGE AVPPGSTREG  540
ERASASANKR PPPPGDGIAG KRPVQGLSQP AQQLQQQQQQ QQQQQQQQQQ QQQQQQQQQQ  600
QQQRQQQQQQ QQQRSGREFG LLAAAAAAGA GASSADASAD DLPRQAGRLP SRDVQAAAAV  660
ARLQQHLQQQ QQQRIMDSAV GTSGSCSGAL RPAGWEAGCT VAAAAAAGVR RPQGPARPGP  720
GRDAGPGPGS GLSSKAANVS MEAHEAMMGG QRRSPRPAQA GMASADAQGS FEPRPAKRLK  780
AATGRRPSKE VEVQDMGVEK QQSQEQQKQQ HPQELLLAHV LAAMLQRSKQ AGVASQEQPQ  840
QQQRVQEQQL QEQQRRHRQQ QQQQQQQQQR SVPQQRHQQT LQQQQQQQQQ QQQQQQQQQQ  900
QQQQQQQQQQ QQQQQQQQQQ RQEVPMGAAS ADAGSRPARS LLETIAHAAQ QQELQQKALA  960
PRHQQQQRQQ EQQQRQRDAH TVRRRASGGE DLDTSELRHE YMDWAYRGGD DGGGYDTVPA  1020
GGGGRGFGGA GGGGGGILMR DLQHRAFLVQ QQQRTSGGNG YNAAAAAAVA TAAGRASASA  1080
SESQGRQAGM PYSAISDQFD MTRHYNQGMP YKIVGNIVAT TGSSGAPRGT PRARCVSDSA  1140
AATAAPPSDP EPSDPQGPTR GTSYVDNLLD MLLIRGVAGK ALKPLLQQHQ HQQQHLHHHH  1200
QQQQPQYPHP GQLQLAPRES SQGAGYTPHA GLGGGAVSGV RQVAPGTGGA GPMLLPVLDL  1260
GKPPTALAF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002950870.10.0hypothetical protein VOLCADRAFT_117686
TrEMBLD8TWP50.0D8TWP5_VOLCA; Uncharacterized protein
STRINGXP_002950870.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1233533