PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0033s0073.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family HSF
Protein Properties Length: 784aa    MW: 79804.8 Da    PI: 5.8656
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0033s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.3e-33111032103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d+++++++sw  +g sf+v+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +gkk
  Vocar.0033s0073.1.p  11 FLIKTYDLVDDPATDSIVSWGGDGCSFIVWKPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFVRGKK 91 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          e+l+ i+r+k +
  Vocar.0033s0073.1.p  92 EQLRGIHRRKPS 103
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-37494IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-346100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-597100IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-2911100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-181134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-184961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MTNPANQPPP FLIKTYDLVD DPATDSIVSW GGDGCSFIVW KPPEFARDLL PKHFKHNNFS  60
SFVRQLNTYG FRKVDPDRWE FANEHFVRGK KEQLRGIHRR KPSSSQHHSH HHSGAGGING  120
TGGSAGAVAV PSNALIAAGT AAPAIEIGAY GGFQEEIDNL KRDKNLLMVE LVRVRQQQAG  180
TDAKMRDLQA RLEATEAKQQ TMINMFAAAF KHPSVFQRML STMATGGVQR LANAPTYPSP  240
VTNGGRRKRR ARGESPLEMD LGNGVGVNEV IDADMADHGS GGGAAGSPGG TGGGGDDTSS  300
NGSASGLAMG AVTHQQLVQY NPNAAGGDVL NDMMLRSFQT LLSTAEDVTG DVTGAFNSLA  360
IGPQASAGTT VPVVTIHEQP CGTSPALGGT SSSHEVSLLT EYGAPEPLLS RTHRLSPAPL  420
APHGSFPSWR ACATSHGSPG LTNGVVAMSP LPLGSTAIQP YHAPHTLGLA GLAHGLEAAA  480
ATPQPAPLVD TTEAALIIPK PEPLTAHLLP VNGGLGMTVM PVSVEWRAWE GTSCSVRFPL  540
PVPPEPQVHN GAAAVACNGA MPCAAGGTAP SAAASAAGKP AAAAPMGTVV AVGPASASGA  600
VGPAASLGSG PHVHTMIPIQ SVTMAPPTQS MPTGQPAPTG LPAIGSAATA AVAVAAVAAA  660
APSSTEASAT VAASSMWTPV AAAVTPLVAA ETAAAVRQPP LPVNDNPTVS SPDDEDDGMG  720
LPVDLMHTLR SMASGELVLP EDGDFGDDVW AHLMTAASAQ PADGVSGLGM DLREIIPPSV  780
LED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-23110511125Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002955685.10.0heat shock transcription factor
TrEMBLD8UAH40.0D8UAH4_VOLCA; Heat shock transcription factor
STRINGXP_002955685.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.15e-64heat shock transcription factor A1D