PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0032s0011.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 1023aa MW: 105523 Da PI: 5.6368

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0032s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.3	1.6e-13	770	830	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rerrk++NRe+Arr+R+R+++ + eL ++v++ e+ N+ ++++l++l++ l +++ Vocar.0032s0011.1.p 770 ADRRERRKESNRESARRCRLRREKDTCELSRRVAAQETINSNMASQLQRLEQATNVLLDQN 830 789*************************************************999888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-8	768	828	No hit	No description
SMART	SM00338	4.1E-9	768	832	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.105	770	826	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-11	770	831	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.64E-7	772	828	No hit	No description
CDD	cd14702	2.27E-16	773	824	No hit	No description
PROSITE pattern	PS00036	0	775	790	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MQAAYHTEAL GSGPTYFSHA HLVPRPPAGS GYPFGYHAPN YGDGSNAPHL FLPTGYSGVT 60 PGPFPSIGAD AAAAAAVQPQ AYARPGFNYA SPFTAALATP LLNAVQSSLI SASSNAASEM 120 QPLQASPAQP PGLWVPENAS SSSDNGAQPS VGAFNAPGAV HSGAQQPYAV LPTAVLPPPQ 180 QQPQQQQDLG GPSLGSSAMG MPGLPAALAS SGYGAAVDVW KHLAMVAATA TGGPQGAAQL 240 QMQGPYGTDY QLPYVQQQQQ QAATAALQMQ AAYLQQQQQQ QQPQQQQEPA YATACQAIAS 300 LGAAAAAASL GAAQGPAGHG LTLGAASAPT HVLQLIQQQQ QQQQHKLQQQ QMQAAVTPDS 360 LSDPALAAAA ATALHLLQLP AGLRALAACG MMPHLLQPQQ PQPTQPQALQ LPICTAASGG 420 CYSPGILAAL LPPLASSSYT PCEPLTAAAR ASLVQLPYQA PGSAPLLFSA QLPPRPAFPL 480 QNGSPGVYTQ DGGPEVTDPR LQHLLQQRQQ QQQPQSQDQP QKLQQQQPAQ TLTGEAQQMD 540 ITSNQDFPEQ KSQRQPLRQQ MPPQGTQAEQ PQGEGRRAQP SSPSAAAAAL RRESLGGSLS 600 APSPVDNEPY TEETSSPSPT REPSSAPSGQ VMGAPQPTPA ALLILGLQQQ QQPPQQQQQQ 660 LCPFPLGGES PMLRPPAELQ VRASPRKSRL PAVQPGLPPG PQLLHFAGVP LQLPLPHAVL 720 QAAACHPVQP ASSCPPGAAK SRAAGGAVTA ACTSTSAPVG GLETRRRTQA DRRERRKESN 780 RESARRCRLR REKDTCELSR RVAAQETINS NMASQLQRLE QATNVLLDQN HVLEAWLKHI 840 QEAGDGASAA ASTILGYVRN LDEQMAAAAA AVQLQAVASQ GSYLPADSMA MVQIQPHPQS 900 GASAGEAQGL QQHHLGWTSE GAAVASGAGA AGGVIDSESG DAATALAARG FALGHAGFRS 960 MRGGAVGGGG TDAGPLGLGG VLGVASRSSG MVDIEEETDN TEDEEQLSDG DDDGVVDLEE 1020 QL*

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MQAAYHTEAL GSGPTYFSHA HLVPRPPAGS GYPFGYHAPN YGDGSNAPHL FLPTGYSGVT  60
PGPFPSIGAD AAAAAAVQPQ AYARPGFNYA SPFTAALATP LLNAVQSSLI SASSNAASEM  120
QPLQASPAQP PGLWVPENAS SSSDNGAQPS VGAFNAPGAV HSGAQQPYAV LPTAVLPPPQ  180
QQPQQQQDLG GPSLGSSAMG MPGLPAALAS SGYGAAVDVW KHLAMVAATA TGGPQGAAQL  240
QMQGPYGTDY QLPYVQQQQQ QAATAALQMQ AAYLQQQQQQ QQPQQQQEPA YATACQAIAS  300
LGAAAAAASL GAAQGPAGHG LTLGAASAPT HVLQLIQQQQ QQQQHKLQQQ QMQAAVTPDS  360
LSDPALAAAA ATALHLLQLP AGLRALAACG MMPHLLQPQQ PQPTQPQALQ LPICTAASGG  420
CYSPGILAAL LPPLASSSYT PCEPLTAAAR ASLVQLPYQA PGSAPLLFSA QLPPRPAFPL  480
QNGSPGVYTQ DGGPEVTDPR LQHLLQQRQQ QQQPQSQDQP QKLQQQQPAQ TLTGEAQQMD  540
ITSNQDFPEQ KSQRQPLRQQ MPPQGTQAEQ PQGEGRRAQP SSPSAAAAAL RRESLGGSLS  600
APSPVDNEPY TEETSSPSPT REPSSAPSGQ VMGAPQPTPA ALLILGLQQQ QQPPQQQQQQ  660
LCPFPLGGES PMLRPPAELQ VRASPRKSRL PAVQPGLPPG PQLLHFAGVP LQLPLPHAVL  720
QAAACHPVQP ASSCPPGAAK SRAAGGAVTA ACTSTSAPVG GLETRRRTQA DRRERRKESN  780
RESARRCRLR REKDTCELSR RVAAQETINS NMASQLQRLE QATNVLLDQN HVLEAWLKHI  840
QEAGDGASAA ASTILGYVRN LDEQMAAAAA AVQLQAVASQ GSYLPADSMA MVQIQPHPQS  900
GASAGEAQGL QQHHLGWTSE GAAVASGAGA AGGVIDSESG DAATALAARG FALGHAGFRS  960
MRGGAVGGGG TDAGPLGLGG VLGVASRSSG MVDIEEETDN TEDEEQLSDG DDDGVVDLEE  1020
QL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	784	791	RRCRLRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002952154.1	1e-179	hypothetical protein VOLCADRAFT_92771
TrEMBL	D8U0X4	1e-177	D8U0X4_VOLCA; Uncharacterized protein
STRING	XP_002952154.1	1e-178	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP14478	2	2

Link Out ? help Back to Top
Phytozome	Vocar.0032s0011.1.p